| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,538,486 – 4,538,606 |
| Length | 120 |
| Max. P | 0.672434 |
| Location | 4,538,486 – 4,538,606 |
|---|---|
| Length | 120 |
| Sequences | 7 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.43 |
| Shannon entropy | 0.48263 |
| G+C content | 0.50833 |
| Mean single sequence MFE | -31.16 |
| Consensus MFE | -17.14 |
| Energy contribution | -17.13 |
| Covariance contribution | -0.01 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.672434 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4538486 120 - 24543557 GCGAAAAGAACAGGCGACCCAUCACAAAAAGCGUGAUGGCCAUCAGAGGUCCAAGAUCCCGUUUGACAGUCGAAUAAAUGCAGGCGAAGAAGACGAAUAAGGCGAAGUGCCAGCAUGCCC ............(((((((((((((.......)))))))...(((((((.........)).)))))..)))......((((.((((.......(......)......)))).))))))). ( -29.32, z-score = -1.04, R) >droWil1.scaffold_180698 648342 120 + 11422946 AAGAGAAGAAUAGACGGCCCAUCACAAAAAGAGUUAUGGCCAUAAGAGAUCCGAGAUCUCGUUUUAUUGUCGAAUAGAUGCAAACGAAGAAGACCAUGAGAGAAAAAUGCCACGCCCAAC ...............(((...((.......))....((((.....((((((...)))))).((((((.(((....................))).)))))).......)))).))).... ( -19.05, z-score = -0.86, R) >droEre2.scaffold_4784 7245388 120 - 25762168 GCGAAAAGAACAGGCGACCCAUCACGAAAAGCGUGAUGGCCAUCAGGGGUCCAAGAUCUCUUUUGACAGUCGAAUAAAUGCAAGCGAAGAAGACGAAUAAGGCAAAGUGCCAGCUGGCAC ..............((((((((((((.....)))))))).((..(((((((...)))))))..))...))))......(((.(((...(....)......(((.....))).))).))). ( -33.50, z-score = -1.49, R) >droYak2.chr3L 5111011 120 - 24197627 GCGAAAAGAACAGGCGACCCAUCACGAAAAGCGUGAUGGCCAUCAGAGGGCCCAGAUCCCUUUUGACAGUCGAAUAAAUGCAGGCGAAGAAGACGAACAAGGCAAAGUGCCAGCUGGCAC ..............((((((((((((.....))))))))...((((((((........))))))))..))))......(((.(((...(....)......(((.....))).))).))). ( -34.20, z-score = -1.49, R) >droSec1.super_2 4521241 120 - 7591821 GCGAAAAGAACAGGCGACCCAUCACGAAAAGCGUGAUGGCCAUCAGAGGUCCAAGAUCCCUUUUGACAGUCGAAUAAAUGCAGGCGAAGAAGACGAAUAAGGCAAAGUGCCAGCAUGCCC ............((((((((((((((.....))))))))...(((((((..........)))))))..)))......((((.((((.......(......)......)))).))))))). ( -32.82, z-score = -2.14, R) >droSim1.chr3L 4070250 120 - 22553184 GCGAAAAGAACAGGCGACCCAUCACGAAAAGCGUGAUGGCCAUCAGAGGUCCAAGAUCCCUUUUGACAGUCGAGUAAAUGCAGGCGAAGAAGACGAAUAAGGCAAAGUGCCAGCAUGCCC ............((((((((((((((.....))))))))...(((((((..........)))))))..)))......((((.((((.......(......)......)))).))))))). ( -32.82, z-score = -1.95, R) >anoGam1.chr2L 48271199 120 - 48795086 AUGAGAUCAGCCACCGUACGGCCACCAUGACGGUCGAGGCAAUCGGGAACGGGAAGUUGCGCUUGAUCGUGGAAUGCAUGCUGAAGAUCACACAGAAGCAGGCCAACAGCCAGUACCAUC ...............(((((((.......((((((((((((((((....))....))))).)))))))))((..(((...(((.........)))..)))..))....))).)))).... ( -36.40, z-score = -0.35, R) >consensus GCGAAAAGAACAGGCGACCCAUCACGAAAAGCGUGAUGGCCAUCAGAGGUCCAAGAUCCCUUUUGACAGUCGAAUAAAUGCAGGCGAAGAAGACGAAUAAGGCAAAGUGCCAGCAUGCAC ((............((((((((((((.....))))))))...(((((((((...))))...)))))..))))............................(((.....))).))...... (-17.14 = -17.13 + -0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:02:53 2011