| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,516,674 – 4,516,734 |
| Length | 60 |
| Max. P | 0.797105 |
| Location | 4,516,674 – 4,516,734 |
|---|---|
| Length | 60 |
| Sequences | 3 |
| Columns | 60 |
| Reading direction | reverse |
| Mean pairwise identity | 75.56 |
| Shannon entropy | 0.34363 |
| G+C content | 0.40948 |
| Mean single sequence MFE | -12.57 |
| Consensus MFE | -8.77 |
| Energy contribution | -9.77 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.797105 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4516674 60 - 24543557 UUUCGAUUUUUUAUCUUUUCGUCCAGUUUGGAUGUGCUCCAAGCUAGGCACGCAGUUGAA .............((..(((((((((((((((.....)))))))).)).))).))..)). ( -15.50, z-score = -2.03, R) >droSec1.super_2 4499256 60 - 7591821 UUUCGAUUGUUUAUUUUUUUGUCCAGUUUGGAUGUGCUCCAAGCUAGGCACCCAGUUGAA .((((((((..........((((.((((((((.....)))))))).))))..)))))))) ( -17.00, z-score = -3.00, R) >droEre2.scaffold_4784 7222124 51 - 25762168 ---------UUUAUGUAUACGUCCAGUUUUUAUGUGCUCCAACCUAGGCACCCAACCAAA ---------........................(((((........)))))......... ( -5.20, z-score = 0.06, R) >consensus UUUCGAUU_UUUAUCUUUUCGUCCAGUUUGGAUGUGCUCCAAGCUAGGCACCCAGUUGAA ....................(((.((((((((.....)))))))).)))........... ( -8.77 = -9.77 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:02:51 2011