| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,480,384 – 4,480,487 |
| Length | 103 |
| Max. P | 0.991374 |
| Location | 4,480,384 – 4,480,487 |
|---|---|
| Length | 103 |
| Sequences | 12 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 75.14 |
| Shannon entropy | 0.54823 |
| G+C content | 0.50968 |
| Mean single sequence MFE | -26.96 |
| Consensus MFE | -19.69 |
| Energy contribution | -19.94 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.47 |
| SVM RNA-class probability | 0.991374 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4480384 103 + 24543557 -AAACAAAUUUCCC-------AACUGU-CUCUUGCAGAAACUCUUCCUGGUCGCUUUUGCCGUGAUCGCAGCCGUGGCUGCCGAUGUCAGCCACCUGCCCUCCAACGAGUAC -.............-------..((((-.....))))..((((.....((((((.......))))))((((..((((((((....).)))))))))))........)))).. ( -29.10, z-score = -2.40, R) >droSim1.chr3L 4011954 103 + 22553184 -AAACAAUUUUUCC-------AACUGU-UUCUUGCAGAAACUCUUCCUGGUCGCUUUUGCCGUGAUCGCAGCCGUGGCUGCCGAUGUCAGCCCCCUCCCCGCCAACGAGUAC -.............-------..((((-.....))))..((((.....((((((.......))))))(((((....))))).........................)))).. ( -23.40, z-score = -0.70, R) >droSec1.super_2 4462596 103 + 7591821 -AAACAAUUUUUCC-------AACUGU-UUCUUGCAGAAACUCUUCCUGGUCGCUUUUGCCGUGAUCGCAGCCGCGGCUGCCGAUGUCAGCCACCUGCCCUCCAACGAGUAC -.............-------..((((-.....))))..((((.....((((((.......))))))((((..(.((((((....).))))).)))))........)))).. ( -26.00, z-score = -1.10, R) >droYak2.chr3L 5052105 104 + 24197627 -AAACAAACUUUCCC------AACCGU-UUCUUUCAGAAACUCUUCCUGGUCGCCUUUGCCGUGAUCGCAGCUGUGGCUGCCGAUGUCAGCCACCUGCCCUCCAACGAGUAC -......((((....------....((-(((.....))))).......((((((.......))))))((((..((((((((....).)))))))))))........)))).. ( -26.80, z-score = -2.08, R) >droEre2.scaffold_4784 7185316 103 + 25762168 -AAACAAACUUUCC-------AACUGU-UUCUUGCAGAAACUCUUCCUGGUCGCUUUCGCCGUGAUCGCAGCAGUGGCUGCCGAUGUCAGCCACCUGCCCACCAACGAGUAC -.............-------..((((-.....))))..((((.....((((((.......))))))((((..((((((((....).)))))))))))........)))).. ( -29.90, z-score = -2.08, R) >droAna3.scaffold_13337 2559653 100 + 23293914 -----CACUAAUCCG------UAUUGU-CUCUUCCAGAAACUCUUCCUGGUCGCUUUCGCCGUGAUCGCAGCCGUGGCUGCUGAUGUCAGCCACCUGCCCUCCAACGAGUAC -----..........------......-...........((((.....((((((.......))))))((((..((((((((....).)))))))))))........)))).. ( -27.60, z-score = -2.01, R) >dp4.chrXR_group8 2574841 111 + 9212921 -AAACUGAUUGGCAUAUCGUUUCCUGUGUUUUUACAGAAAUUCUUCCUGAUCGCUUUUGCCGUGAUCGCAGCCGUGGCUGCUGAUGUCAGCCACCUGCCCUCCAACGAGUAC -..(((..((((......(((((.((((....))))))))).......((((((.......))))))((((..((((((((....).)))))))))))...))))..))).. ( -33.40, z-score = -2.96, R) >droPer1.super_24 1082152 111 - 1556852 -AAACUGAUUGGCAUAUCGUUUCCUGUGUUUUUACAGAAAUUCUUCCUGAUCGCUUUUGCCGUGAUCGCAGCCGUGGCUGCUGAUGUCAGCCACCUGCCCUCCAACGAGUAC -..(((..((((......(((((.((((....))))))))).......((((((.......))))))((((..((((((((....).)))))))))))...))))..))).. ( -33.40, z-score = -2.96, R) >droWil1.scaffold_180698 590623 102 - 11422946 -AAAUGAAUUGAAAU---------UGUGUUCUUGCAGAAAGUUUUCCUGAUCGCCUUUGCCGUGAUCGCAGCUGUGGCUGCUGAUGUCAGUCAUCUGCCAUCGAAUGAGUAC -.........(((((---------(.(((....))).))...))))..((((((.......))))))(((((....)))))(((((.(((....))).)))))......... ( -24.20, z-score = -0.21, R) >droMoj3.scaffold_6680 1172257 106 + 24764193 UAAUCAAA-UCAAAUCUC-----UUUCUGCUCAACAGAAACUUUUCCUCGUUGCUUUUGCUGUGAUAGCAGCUGUGGCCGCUGAUGUCGCCAACCUGCCCGUCAAUGAGUAC ........-.........-----((((((.....))))))......((((((((....(((((....)))))..((((.((....)).))))........).)))))))... ( -25.30, z-score = -1.69, R) >droVir3.scaffold_12758 47381 99 + 972128 -UAACUAAUCUUUC-----------GC-AUCUUACAGAAACUUUUCCUGGUUGCUUUCGCGGUGAUCGCAGCUGUGGCUGCUGAUGUCAGCCAUCUGCCCUCCAACGAGUAC -.............-----------((-(.....(((.........)))..))).((((..(.((..((((..((((((((....).)))))))))))..)))..))))... ( -24.80, z-score = -0.68, R) >droGri2.scaffold_15110 23255359 95 - 24565398 -AACUAAACUCAACUCCCA----CUUUUGCUCCAUAGAAAUUGUUCCUGGUUGCUUUCGCUGUGAUCGCAGCUGUCGCUGCUGAUGUCUCCAACGAGUAU------------ -..................----....((((((((((..(..((........))..)..)))))((((((((....))))).))).........))))).------------ ( -19.60, z-score = -0.86, R) >consensus _AAACAAAUUUUCC_______AACUGU_UUCUUACAGAAACUCUUCCUGGUCGCUUUUGCCGUGAUCGCAGCCGUGGCUGCUGAUGUCAGCCACCUGCCCUCCAACGAGUAC .......................................((((.....((((((.......))))))((((..((((((((....).)))))))))))........)))).. (-19.69 = -19.94 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:02:49 2011