| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,479,139 – 4,479,230 |
| Length | 91 |
| Max. P | 0.539652 |
| Location | 4,479,139 – 4,479,230 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 74.80 |
| Shannon entropy | 0.46034 |
| G+C content | 0.33320 |
| Mean single sequence MFE | -15.83 |
| Consensus MFE | -7.82 |
| Energy contribution | -8.63 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.539652 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4479139 91 - 24543557 ----------GCAUUUUUCAAUAUCAUCCAGAUGUGACAUUUAAUCUGCAAGUGAUUUUUUGUGUCACUUCUGGUUAAAAACCUCUCACCAAUUGUUUCCA ----------.................(((((.(((((((..((((.......))))....))))))).)))))........................... ( -19.40, z-score = -2.77, R) >droSim1.chr3L 4010792 86 - 22553184 --------------UUUUCAAUAUCAUCCAGAUGUGACAUUUGAUCUGCAAGUGA-CUUUUGUGUCACUUCUGUUAAAAAACCUCUCACCAAUUGUUUCCA --------------..............((((.(((((((..((((.......))-.))..))))))).))))............................ ( -14.80, z-score = -1.19, R) >droSec1.super_2 4461414 90 - 7591821 ----------GCAUUUUUCAAUAUCAUCCAGAUGUGACAUUUGAUCUGCAAGUGA-CUUUUGUGUCACUUCUGUUAAAAAACCUCUCACCAAUUGUUUCCA ----------(((....((((..((((......))))...))))..)))((((((-(......)))))))............................... ( -14.80, z-score = -0.90, R) >droYak2.chr3L 5050892 90 - 24197627 ----------GCAUUUUUCUAUAUCAUCCAGAUGUGUCAUUUGAUCUGCAACUGA-UUUUUGUGUCACUUCUGUUCAAAAACCUCUCACCAAUUGUUUCGA ----------..................((((.(((.(((..((((.......))-))...))).))).))))............................ ( -13.50, z-score = -0.82, R) >droEre2.scaffold_4784 7184033 89 - 25762168 ----------GCAUUUUUCUAUAUCAUUCAGAUGUGAUAUUUGAUCUGCAACUGA-UUUUUGUGUCACUUCUGUU-AAAAAGCUCUCAUCAAUUGCUUCGA ----------..................((((.(((((((..((((.......))-))...))))))).))))..-...((((...........))))... ( -17.00, z-score = -1.28, R) >droAna3.scaffold_13337 2558404 88 - 23293914 AUUAACAGUAAUAAGGUUAGAUAUCCUUCAGUUGUACCAAUAAA----CAAUUGA-AAGUUGC-UUGCUCCACUUAAAACAUAUCUAAUUAAUU------- ..............((((((((((..(((((((((........)----)))))))-)(((...-..)))...........))))))))))....------- ( -15.50, z-score = -2.34, R) >consensus __________GCAUUUUUCAAUAUCAUCCAGAUGUGACAUUUGAUCUGCAAGUGA_UUUUUGUGUCACUUCUGUUAAAAAACCUCUCACCAAUUGUUUCCA ............................((((.(((((((........(....).......))))))).))))............................ ( -7.82 = -8.63 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:02:48 2011