| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,439,005 – 4,439,099 |
| Length | 94 |
| Max. P | 0.998017 |
| Location | 4,439,005 – 4,439,099 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 99.47 |
| Shannon entropy | 0.00863 |
| G+C content | 0.43883 |
| Mean single sequence MFE | -20.65 |
| Consensus MFE | -20.65 |
| Energy contribution | -20.65 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.85 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.60 |
| SVM RNA-class probability | 0.954201 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4439005 94 + 24543557 CGGUCGGUUCGUCAGUCGCCAGGUUCAUCAGUCAUUUAGUCAAUAUGCCAGUUGGCUUAGUCAAUAAAUUGAGUUAGCCGUGGCAACUUCAUUA .((.((..(....)..)))).........................(((((..(((((.(.((((....)))).).))))))))))......... ( -20.50, z-score = -1.74, R) >droYak2.chr3L 5016462 94 + 24197627 CGGUCGGUUAGUCAGUCGCCAGGUUCAUCAGUCAUUUAGUCAAUAUGCCAGUUGGCUUAGUCAAUAAAUUGAGUUAGCCGUGGCAACUUCAUUA .((.((..(....)..)))).........................(((((..(((((.(.((((....)))).).))))))))))......... ( -20.70, z-score = -1.88, R) >droSec1.super_2 4427826 94 + 7591821 CGGUCGGUUAGUCAGUCGCCAGGUUCAUCAGUCAUUUAGUCAAUAUGCCAGUUGGCUUAGUCAAUAAAUUGAGUUAGCCGUGGCAACUUCAUUA .((.((..(....)..)))).........................(((((..(((((.(.((((....)))).).))))))))))......... ( -20.70, z-score = -1.88, R) >droSim1.chr3L 3974569 94 + 22553184 CGGUCGGUUAGUCAGUCGCCAGGUUCAUCAGUCAUUUAGUCAAUAUGCCAGUUGGCUUAGUCAAUAAAUUGAGUUAGCCGUGGCAACUUCAUUA .((.((..(....)..)))).........................(((((..(((((.(.((((....)))).).))))))))))......... ( -20.70, z-score = -1.88, R) >consensus CGGUCGGUUAGUCAGUCGCCAGGUUCAUCAGUCAUUUAGUCAAUAUGCCAGUUGGCUUAGUCAAUAAAUUGAGUUAGCCGUGGCAACUUCAUUA .((.((..(....)..)))).........................(((((..(((((.(.((((....)))).).))))))))))......... (-20.65 = -20.65 + 0.00)
| Location | 4,439,005 – 4,439,099 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 99.47 |
| Shannon entropy | 0.00863 |
| G+C content | 0.43883 |
| Mean single sequence MFE | -19.40 |
| Consensus MFE | -19.40 |
| Energy contribution | -19.40 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.62 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.23 |
| SVM RNA-class probability | 0.998017 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4439005 94 - 24543557 UAAUGAAGUUGCCACGGCUAACUCAAUUUAUUGACUAAGCCAACUGGCAUAUUGACUAAAUGACUGAUGAACCUGGCGACUGACGAACCGACCG ......((((((((.((.....(((((((((..(.((.(((....))).)))..).)))))...)))....))))))))))............. ( -19.40, z-score = -3.45, R) >droYak2.chr3L 5016462 94 - 24197627 UAAUGAAGUUGCCACGGCUAACUCAAUUUAUUGACUAAGCCAACUGGCAUAUUGACUAAAUGACUGAUGAACCUGGCGACUGACUAACCGACCG ......((((((((.((.....(((((((((..(.((.(((....))).)))..).)))))...)))....))))))))))............. ( -19.40, z-score = -3.68, R) >droSec1.super_2 4427826 94 - 7591821 UAAUGAAGUUGCCACGGCUAACUCAAUUUAUUGACUAAGCCAACUGGCAUAUUGACUAAAUGACUGAUGAACCUGGCGACUGACUAACCGACCG ......((((((((.((.....(((((((((..(.((.(((....))).)))..).)))))...)))....))))))))))............. ( -19.40, z-score = -3.68, R) >droSim1.chr3L 3974569 94 - 22553184 UAAUGAAGUUGCCACGGCUAACUCAAUUUAUUGACUAAGCCAACUGGCAUAUUGACUAAAUGACUGAUGAACCUGGCGACUGACUAACCGACCG ......((((((((.((.....(((((((((..(.((.(((....))).)))..).)))))...)))....))))))))))............. ( -19.40, z-score = -3.68, R) >consensus UAAUGAAGUUGCCACGGCUAACUCAAUUUAUUGACUAAGCCAACUGGCAUAUUGACUAAAUGACUGAUGAACCUGGCGACUGACUAACCGACCG ......((((((((.((.....(((((((((..(.((.(((....))).)))..).)))))...)))....))))))))))............. (-19.40 = -19.40 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:02:46 2011