| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,423,393 – 4,423,484 |
| Length | 91 |
| Max. P | 0.596897 |
| Location | 4,423,393 – 4,423,484 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 72.24 |
| Shannon entropy | 0.43540 |
| G+C content | 0.33772 |
| Mean single sequence MFE | -19.61 |
| Consensus MFE | -10.09 |
| Energy contribution | -10.28 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.596897 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4423393 91 - 24543557 AAGAUAGAGGUUAUUAUUCUAUUCUAUGGCUUCUUCCUUGCAAAACUGUCUUAGUUUAGCA-----------GAUUUAGUUACAUAUUUCGAACGAAUAUCU-- .(((((((((((((...........))))))))(((..(((.((((((...)))))).)))-----------((..((......))..))....))))))))-- ( -15.00, z-score = -0.20, R) >droEre2.scaffold_4784 7132256 92 - 25762168 AAGAUAGAGGCUAUUAUU-----CUAUGGCUGCUUCCUUGCAAAACUGUCUUAGUUUACUUACU------GGCCAUGGGAUACGGAUUU-GGACUGAUAUUUAC .(((((..(((((.((((-----((((((((((......)).((((((...)))))).......------))))))))))))......)-)).))..))))).. ( -22.90, z-score = -2.00, R) >droSec1.super_2 4412474 97 - 7591821 AAGAUAGAGGUUAUUAUU-----CUAUGACUACAUCCUUGCAAAACUGUCUUAGUUUAGUAACUUGCUGUCGGACACAGAUACAAAAUUUGAACGGAUAUCU-- ..((((((((((((((..-----(((.(((.................))).)))..))))))))).))))).....(((((.....)))))...........-- ( -21.23, z-score = -1.66, R) >droSim1.chr3L 3960134 77 - 22553184 AAGAUAGAGGUUAUUAUU-----CUAUGACUUCAUCCUUGCAAAACUGUCUUAGUUUAGUA--------------------ACUUGUUUUGAACGGAUAUCU-- .(((((((((((((....-----..)))))))).(((...((((((......((((....)--------------------))).))))))...))))))))-- ( -19.30, z-score = -2.74, R) >consensus AAGAUAGAGGUUAUUAUU_____CUAUGACUUCAUCCUUGCAAAACUGUCUUAGUUUAGUA___________GA_U_AGAUACAUAUUUUGAACGGAUAUCU__ .(((((((((((((...........)))))))).....(((.((((((...)))))).)))....................................))))).. (-10.09 = -10.28 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:02:43 2011