| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,415,092 – 4,415,183 |
| Length | 91 |
| Max. P | 0.519726 |
| Location | 4,415,092 – 4,415,183 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 77.44 |
| Shannon entropy | 0.42854 |
| G+C content | 0.39094 |
| Mean single sequence MFE | -18.84 |
| Consensus MFE | -8.83 |
| Energy contribution | -9.86 |
| Covariance contribution | 1.02 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.519726 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4415092 91 + 24543557 UUCCUUCAAAACAAAGGCACUUUUGCACUUUGACUGGGCGAGAGCUUAAAGCUAAUCAGAUACGA-UUUGACUGAUAUGAAUAUAUGCCCAC------------ ...........((((((((....))).)))))..((((((..(((.....))).(((((......-.....))))).........)))))).------------ ( -21.70, z-score = -2.77, R) >droSim1.chr3L 3951592 91 + 22553184 UUCUCUCAAAACAAAGGCACUUUUGCACUUUGACUGGGCGAGAGCUUAAAGCUAAUCAGAUACGA-UUUGACUGAUAUGAAUAUAUGCCCAC------------ ...........((((((((....))).)))))..((((((..(((.....))).(((((......-.....))))).........)))))).------------ ( -21.70, z-score = -2.61, R) >droSec1.super_2 4404253 91 + 7591821 UUCCCUCAAAACAAAGGCACUUUUGCACUUUGACUGGGCGAGAGCUUAAAGCUAAUCAGAUACGA-UUUGACUGAUAUGAAUAUAUGCCCAC------------ ...........((((((((....))).)))))..((((((..(((.....))).(((((......-.....))))).........)))))).------------ ( -21.70, z-score = -2.75, R) >droYak2.chr3L 4991230 91 + 24197627 UUCCCCGAAAACAAAGGCUCUUUUGCACUUUGAAUGGGCGAGAGCUUAAAGCUAAUCAGAUACGA-UUUGACUGAUAUGAAUAUAUGACCAC------------ (((((((....(((((((......)).)))))..)))).)))(((.....))).(((((......-.....)))))................------------ ( -17.50, z-score = -1.45, R) >droEre2.scaffold_4784 7123760 91 + 25762168 GUCUCUAAAAACAAAGGCACUUUUGCACUUUGACUGGGUGAGAGCUUAAAGCUAAUCAGAUACGA-UUUGACUGAUAUGAAUAUAUGCCCAC------------ ...........((((((((....))).)))))..(((((...(((.....))).(((((......-.....)))))..........))))).------------ ( -19.20, z-score = -1.59, R) >droAna3.scaffold_13337 2495642 100 + 23293914 UUCCCUCAAAACAAAGGAACUU--GCACUUUGACAGG--CAGAGCUUAAAGCUAAUCAGAUACGAAUUUGACUGAUAUGAAUAUAUACAAAAAAAAAUAUGGGU ..(((......(((((......--...))))).((..--((((((.....)))..((((((....)))))))))...)).....................))). ( -16.50, z-score = -1.33, R) >droMoj3.scaffold_6680 1089192 77 + 24764193 ------UCAAACAAAGCCA-----AAACAAAGGCCGCA-UAGAGCUUUGUGCUAAUCAAUUGCG---UUAACUGAUAGGAACGCACACGUCU------------ ------.........(((.-----.......))).(((-(((....))))))........((((---((..........)))))).......------------ ( -13.60, z-score = 0.07, R) >consensus UUCCCUCAAAACAAAGGCACUUUUGCACUUUGACUGGGCGAGAGCUUAAAGCUAAUCAGAUACGA_UUUGACUGAUAUGAAUAUAUGCCCAC____________ ...........(((((((......)).)))))..(((.....(((.....))).(((((.((......)).)))))............)))............. ( -8.83 = -9.86 + 1.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:02:43 2011