| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,389,539 – 4,389,632 |
| Length | 93 |
| Max. P | 0.910584 |
| Location | 4,389,539 – 4,389,632 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 86.29 |
| Shannon entropy | 0.23275 |
| G+C content | 0.57155 |
| Mean single sequence MFE | -29.56 |
| Consensus MFE | -24.72 |
| Energy contribution | -26.36 |
| Covariance contribution | 1.64 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.21 |
| SVM RNA-class probability | 0.910584 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4389539 93 - 24543557 CACUGUGCGAUUGUGGAGCAAUGGCAUCACAUUUGUCAGUGGAGUGCAGCACAAUGCCCCACAGCACCCACCCACAAUACACACAGUGCCCGC (((((((.((((((((.....(((((.......)))))((((.((((.((.....))......))))))))))))))).).)))))))..... ( -35.40, z-score = -2.69, R) >droSim1.chr3L 3925911 80 - 22553184 CACUGCGCGAUUGUGGAGCAGUGGCAUCCCAUUUGUCAGUGGAGUGCACCACAAUGCCCCACAG----CACCCACAAUACCCGC--------- ....(((.((((((((.((..(((((.......)))))((((.(.(((......)))))))).)----)..))))))).).)))--------- ( -26.70, z-score = -1.55, R) >droSec1.super_2 4379315 80 - 7591821 CACUGCGCGAUUGUGGAGCAGUGGCAUCCCAUUUGUCAGUGGAGUGCACCACAAUGCCCCACAG----CACCCACAAUACCCGC--------- ....(((.((((((((.((..(((((.......)))))((((.(.(((......)))))))).)----)..))))))).).)))--------- ( -26.70, z-score = -1.55, R) >droYak2.chr3L 4965277 89 - 24197627 CACUGCGGGAUUGUGGAGCAGUGGCAUCUCAUUUGUCAGUGGAGUGCACCACAAUGCCCCACAG----CACCCACAAUAGCCACAGUACCAGC .((((.((.(((((((.((..(((((.......)))))((((.(.(((......)))))))).)----)..)))))))..)).))))...... ( -31.80, z-score = -1.68, R) >droEre2.scaffold_4784 7097275 89 - 25762168 CACUGAACGAUUGUGGAGCAGUGGCAUCUCAUUUGUCAGUGGAGCGCACCACAAUGCCCCACAG----CACCCACAAUACCCACAGUACCCGC .((((....(((((((.((..(((((.......)))))((((.(.(((......)))))))).)----)..))))))).....))))...... ( -27.20, z-score = -1.95, R) >consensus CACUGCGCGAUUGUGGAGCAGUGGCAUCCCAUUUGUCAGUGGAGUGCACCACAAUGCCCCACAG____CACCCACAAUACCCACAGU_CC_GC .((((((..(((((((.....(((((.......)))))((((.(.(((......)))))))).........)))))))...))))))...... (-24.72 = -26.36 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:02:40 2011