| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,383,205 – 4,383,265 |
| Length | 60 |
| Max. P | 0.983000 |
| Location | 4,383,205 – 4,383,265 |
|---|---|
| Length | 60 |
| Sequences | 3 |
| Columns | 60 |
| Reading direction | reverse |
| Mean pairwise identity | 84.97 |
| Shannon entropy | 0.19896 |
| G+C content | 0.30936 |
| Mean single sequence MFE | -12.10 |
| Consensus MFE | -10.01 |
| Energy contribution | -10.01 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.65 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.12 |
| SVM RNA-class probability | 0.983000 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4383205 60 - 24543557 AGCAUAAUCACUUUUGUAUAUAACUUUUUUGAUUGUGCUAGAUACAAUAGUUUCGCCAAG ((((((((((.....((.....)).....)))))))))).((.((....)).))...... ( -12.20, z-score = -2.52, R) >droSim1.chr3L 3919656 52 - 22553184 AGCAUAAUCAUUUUUGU-UAUAA--AUUUUGAUUGUGCUAG-----UUAGUUUCGCCAAG ((((((((((...((..-....)--)...))))))))))..-----.............. ( -11.60, z-score = -2.84, R) >droSec1.super_2 4373104 53 - 7591821 AGCAUAAUCACUUUUGUAUGUAC--AUUUUGAUUGUGCUAG-----UUAGUUUCGCCAAG ((((((((((....(((....))--)...))))))))))..-----.............. ( -12.50, z-score = -2.60, R) >consensus AGCAUAAUCACUUUUGUAUAUAA__AUUUUGAUUGUGCUAG_____UUAGUUUCGCCAAG ((((((((((...................))))))))))..................... (-10.01 = -10.01 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:02:38 2011