| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,374,833 – 4,374,888 |
| Length | 55 |
| Max. P | 0.755137 |
| Location | 4,374,833 – 4,374,888 |
|---|---|
| Length | 55 |
| Sequences | 5 |
| Columns | 55 |
| Reading direction | reverse |
| Mean pairwise identity | 91.09 |
| Shannon entropy | 0.15664 |
| G+C content | 0.43636 |
| Mean single sequence MFE | -13.98 |
| Consensus MFE | -12.04 |
| Energy contribution | -11.72 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.755137 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4374833 55 - 24543557 UGUUUUUGUGGUCGAACUGUUGCAUUUUACGGCAAAGUUUCUAGCGUUCUGCCAC .......(((((.((((..((((........)))).((.....)))))).))))) ( -13.50, z-score = -1.30, R) >droSec1.super_2 4364714 55 - 7591821 UGUUUUUGUGGUCGAACUGUUGCAUUUUACGGCAAAGUUUCCAGCGUUCUGCCAC .......(((((.((((..((((........)))).((.....)))))).))))) ( -13.50, z-score = -1.08, R) >droSim1.chr3L 3911113 55 - 22553184 UGUUUUUGUGGUCGAACUGUUGCAUUUUACGGCAAAGUUUCCAGCAUUCUGCCAC .......(((((.(((.(((((.(((((.....)))))...)))))))).))))) ( -12.00, z-score = -0.69, R) >droYak2.chr3L 4948688 55 - 24197627 UGCCUUUGUGGUCGAACUGUUGCAUUUUACGAUAAAGUUUGCAGCGUUCCACCAC .......(((((.((((.((((((....((......)).)))))))))).))))) ( -19.20, z-score = -3.71, R) >droEre2.scaffold_4784 7082211 55 - 25762168 UGCUUUUGUGGUCGAAUUGUUGCAUUUUACGUUAAAGUUUCCAGCGUUCUACCAC .......(((((.((((.((((.((((((...))))))...)))))))).))))) ( -11.70, z-score = -1.61, R) >consensus UGUUUUUGUGGUCGAACUGUUGCAUUUUACGGCAAAGUUUCCAGCGUUCUGCCAC .......(((((.((((.((((.(((((.....)))))...)))))))).))))) (-12.04 = -11.72 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:02:37 2011