| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,347,170 – 4,347,265 |
| Length | 95 |
| Max. P | 0.985041 |
| Location | 4,347,170 – 4,347,265 |
|---|---|
| Length | 95 |
| Sequences | 7 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 69.98 |
| Shannon entropy | 0.59391 |
| G+C content | 0.49182 |
| Mean single sequence MFE | -26.73 |
| Consensus MFE | -14.43 |
| Energy contribution | -14.51 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.56 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.19 |
| SVM RNA-class probability | 0.985041 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4347170 95 + 24543557 --UGCCCCGCUCUAUAAAUAGAGCC-CUGGUCGAGCCUUAUCAGCCUCGAUCCGCGUGGCCAGAGUUUCGCUUUUCAAGUCUCUGGCUUUUUUCCUUU---- --.((...((((((....)))))).-..(((((((.((....)).))))))).))..((((((((....(((.....)))))))))))..........---- ( -30.40, z-score = -2.91, R) >droSim1.chr3L 3884353 95 + 22553184 --UGCCCCGCUCUAUAAAUAGAGCC-CUGGCCGAGCCUUAUCAGCCUCGAUCCGCGUGGCCAGAGUUUCGCUUUUCAAGUCUCUGGCUUUUUUCCUUU---- --.(((..((((((....)))))).-..)))((((.((....)).))))........((((((((....(((.....)))))))))))..........---- ( -28.20, z-score = -1.93, R) >droSec1.super_2 4339330 95 + 7591821 --UGCUCCGCUCUAUAAAUAGAGCC-CUGGUCGCGCCUUAUCAGCCUCGAUCCGCGUGGCCAGAGUUUCGCUUUUCAAGUCUCUGGCUUUUUUCCUUU---- --.((...((((((....)))))).-((((((((((...(((......)))..))))))))))......)).....((((.....)))).........---- ( -29.30, z-score = -2.53, R) >droYak2.chr3L 4922575 95 + 24197627 --UGCCCCGCUCUAUAAAUAGAGCC-CUGGUCGCGCCUUAUCAGCCUCGAUCCGCGUGGCCAGAGUUUCGCUUUUCAAGUCUCUGGCUUUUUUCCUUU---- --.(((..((((((....)))))).-((((((((((...(((......)))..)))))))))).....................)))...........---- ( -30.40, z-score = -3.03, R) >droEre2.scaffold_4784 7056577 90 + 25762168 --UGC-CCGCUCUAUAAAUAGAGCC-CUGGUCGGGCCUUAUCAGCCUCGAUCCGCGUGGCCAGAGUUUCGCUUUUCAAGUCGCUUUGUUUUUAU-------- --.((-((((((((....)))))).-..((((((((.......))).)))))...).)))((((((...(((.....))).)))))).......-------- ( -26.00, z-score = -1.25, R) >droAna3.scaffold_13337 2415803 83 + 23293914 --------GCUCUAUAAAUAGAGCC-CUGCUCGGGCCUUAUCAGCUCCGAUCCGUGU--UUGCGGCUUGAGAUUUCG---CUUUUUUUUUUUCGCUU----- --------((((((....)))))).-...((((((((.((...((........))..--.)).))))))))......---.................----- ( -19.90, z-score = -0.30, R) >droWil1.scaffold_180949 1076949 98 - 6375548 AAAGACAGCCUAUAUAGAGCUAACUACUAAGCGAGCUUGGCUGG---AAGUCUAUGUCGUU-CGGUCUAUGAGCUGAUAUCUAUAAAUAGUUUUAUGUGUUU ..........((((((((((((.((((((((....))))).)))---......((((((((-((.....))))).))))).......))))))))))))... ( -22.90, z-score = -0.26, R) >consensus __UGCCCCGCUCUAUAAAUAGAGCC_CUGGUCGAGCCUUAUCAGCCUCGAUCCGCGUGGCCAGAGUUUCGCUUUUCAAGUCUCUGGCUUUUUUCCUUU____ ........((((((....))))))..(((((((.((...(((......)))..)).)))))))....................................... (-14.43 = -14.51 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:02:36 2011