| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,342,807 – 4,342,904 |
| Length | 97 |
| Max. P | 0.594977 |
| Location | 4,342,807 – 4,342,904 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 66.08 |
| Shannon entropy | 0.62989 |
| G+C content | 0.40609 |
| Mean single sequence MFE | -21.57 |
| Consensus MFE | -8.35 |
| Energy contribution | -10.35 |
| Covariance contribution | 2.00 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.594977 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4342807 97 + 24543557 --AUUUAUUUAUGUAUUUAUAUAUUUCAAUGCAGUUACGACUGCAUUUUCUAGCAGUGCAU-CCACGACAAAUUCUUGGAGAAGAACAACGGAUUCAGCU --.........................((((((((....))))))))....(((.(((...-.)))....((((((((........))).)))))..))) ( -15.30, z-score = -0.09, R) >droEre2.scaffold_4784 7052241 96 + 25762168 AUUGAUUUAAAUGAGUGUGUAUGCUC--AUGCAGUUACGA-UGCGUUUUCUAGCAGUGCAU-CAGCGACGAAUUCUUGGAGAAGAACAACGGAUUCAGCU ..........((((((......))))--))((.((..(((-((((...........)))))-).)..))(((((((((........))).)))))).)). ( -23.00, z-score = 0.22, R) >droYak2.chr3L 4918191 74 + 24197627 ----------------------AUGC--AUGCAGUUGAGA-UGCAUUUUCUAGCAGUGCAU-CCACGACGAAUUCUUGGAGAAGAACAACGGAUUCAGCU ----------------------....--..((.((((.((-((((((.......)))))))-)..))))(((((((((........))).)))))).)). ( -21.20, z-score = -1.73, R) >droSec1.super_2 4335109 95 + 7591821 ----AUUUAUAUGUUUAUAUAUAUUUCAAUGCAGUUACGACUGCAUUUUCUAGCAGUGCAU-CCGCGACGAAUUCUUGGAGAGGAACAACGGAUUCAGCU ----....((((((....))))))...((((((((....))))))))....(((.((((..-..)).))(((((((((........))).)))))).))) ( -21.10, z-score = -1.18, R) >droSim1.chr3L 3880166 85 + 22553184 --------------UUAUAUAUAUUUCAAUGCAGUUACGACUGCAUUUUCUAGCAGUGCAU-CCGCGACGAAUUCUUGGAGAGGAACAACGGAUUCAGCU --------------.............((((((((....))))))))....(((.((((..-..)).))(((((((((........))).)))))).))) ( -20.20, z-score = -1.49, R) >droPer1.super_47 264940 79 - 592741 ------------AUCUCCUUGUAUGA-AAUUCUAUUGAAUUUCGUUUUUGUUGCAGUGCAUGUUGCAGCAGAUUCCAAGGGGGAGGCGGUGG-------- ------------.((((((((.((((-(((((....))))))))).((((((((((......))))))))))...)))))))).........-------- ( -28.60, z-score = -3.54, R) >consensus ____________GUUUAUAUAUAUUU_AAUGCAGUUACGACUGCAUUUUCUAGCAGUGCAU_CCGCGACGAAUUCUUGGAGAAGAACAACGGAUUCAGCU ...........................((((((((....))))))))....(((.(((.....)))...(((((((((........))).)))))).))) ( -8.35 = -10.35 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:02:34 2011