Locus 6171

Sequence ID dm3.chr3L
Location 4,339,902 – 4,339,995
Length 93
Max. P 0.623717
window8484

overview

Window 4

Location 4,339,902 – 4,339,995
Length 93
Sequences 3
Columns 110
Reading direction reverse
Mean pairwise identity 78.40
Shannon entropy 0.29219
G+C content 0.39449
Mean single sequence MFE -26.47
Consensus MFE -16.58
Energy contribution -16.03
Covariance contribution -0.55
Combinations/Pair 1.17
Mean z-score -1.93
Structure conservation index 0.63
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.27
SVM RNA-class probability 0.623717
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 4339902 93 - 24543557
ACCCCUGGCCAUAUAUCUAUAUACAUUUAUGUUUCUUUUAUAAUAUAUGUAUAUGUAGGUAGGUAGAGCAGUCGAAG-----------------CAAUUUCCCGCCGGCG
....(((((....((((((((((.((.((((((........)))))).)).))))))))))((.(((((.......)-----------------)..))).))))))).. ( -21.00, z-score =  -0.97, R)
>droSim1.chr3L 3877295 102 - 22553184
ACCCCUGGCCAUAUAUAUGUA------UAUGCUUUUC--UUUAUAUAUAUGUAUGUAGGUAGGUAGAGCAGCCGAAGCAGAUCAAUUGGAAAAACAAUUUCCCGCCGGCG
...((((.(((((((((((((------((((......--..))))))))))))))).)))))).......((((..((.((..(((((......)))))))..)))))). ( -29.20, z-score =  -2.20, R)
>droSec1.super_2 4332243 104 - 7591821
ACCCCUGGCCAUAUAUAUAUA------UAUGUUUUUCUUUUUAUAUAUAUGUAUGUAGGUAGGUAGAGCAGCCGAAGCAGAUCAAUUGGAAAAACAAUUUCCCGCCGGCG
...((((.(((((((((((((------((((..........))))))))))))))).)))))).......((((..((.((..(((((......)))))))..)))))). ( -29.20, z-score =  -2.64, R)
>consensus
ACCCCUGGCCAUAUAUAUAUA______UAUGUUUUUCUUUUUAUAUAUAUGUAUGUAGGUAGGUAGAGCAGCCGAAGCAGAUCAAUUGGAAAAACAAUUUCCCGCCGGCG
(((((((..((((((((((((......................))))))))))))))))..)))......((((...............................)))). (-16.58 = -16.03 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:02:33 2011