| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,322,229 – 4,322,315 |
| Length | 86 |
| Max. P | 0.955921 |
| Location | 4,322,229 – 4,322,315 |
|---|---|
| Length | 86 |
| Sequences | 6 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 68.01 |
| Shannon entropy | 0.59049 |
| G+C content | 0.37537 |
| Mean single sequence MFE | -18.50 |
| Consensus MFE | -9.86 |
| Energy contribution | -11.50 |
| Covariance contribution | 1.64 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.62 |
| SVM RNA-class probability | 0.955921 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4322229 86 + 24543557 UAAAU--UAGUGAUACCGUAAAU---ACGCCAGUAAUGCCGUGCUUUGAA---GCUACUAAAAUCCGUAGAGCAGAAUUAAGAAGAUAUGGUCA .....--.......((((((..(---(((.((....)).)))).((((..---.((((........))))..))))..........)))))).. ( -15.70, z-score = -1.01, R) >droAna3.scaffold_13337 2398583 83 + 23293914 AAAAUCGAAGAGUGGCAGUAUGCGGAGCGCCAAAAAAAGCCUAUAUU------UUUGCCACAAU--GCAAAAUUCAAU---AAGCGUAUGGUCA ......((...(((((((.(((..(.((..........)))..))).------.))))))).((--((..........---..))))....)). ( -16.30, z-score = 0.03, R) >droEre2.scaffold_4784 7039049 92 + 25762168 UAAAU--AAGAGAGACCGUAAAUUCAAUGCCAAUAAUGCCGCGCAGUCAACAAUCUACUAAAAUUGGUAGAUCAGAAAUUAGAAGGUGUGGUCA .....--......(((((((..(((..((((.........).))).......((((((((....)))))))).........)))..))))))). ( -18.70, z-score = -1.71, R) >droYak2.chr3L 4904704 92 + 24197627 CAAAG--AAGAGAGACCGUAAAUGCAAUGGCAAUAAUGCCGCGCUUUUAACAAUCUACUAAAAUUGGUAGAACGGAAAUAGGAAGUUAUGGUCA .....--......((((((((..((..(((((....))))).)).........(((((((....)))))))..............)))))))). ( -23.50, z-score = -3.10, R) >droSec1.super_2 4322130 86 + 7591821 UGAAU--UAGUGAGACCGUAAAU---AUGUCAGUAAUGGCCUGCUUUGAA---UCUACUAGAAUUCCCAGAACAGAAGUAAAAAGAUAUGGUCA .....--......(((((((...---..((((....)))).((((((...---(((............)))...))))))......))))))). ( -17.80, z-score = -1.68, R) >droSim1.chr3L 3867134 86 + 22553184 UGAAU--UAGUGAGACCGUAAAU---ACGUCAGCAAUGGCCUGCUUUGAA---UCUACUAGAAUUCUCAGAACAGAAGUAAAAAGAUAUGGUCA .....--......(((((((...---..((((....)))).((((((...---(((...((....)).)))...))))))......))))))). ( -19.00, z-score = -1.51, R) >consensus UAAAU__AAGAGAGACCGUAAAU___ACGCCAAUAAUGCCCUGCUUUGAA___UCUACUAAAAUUCGCAGAACAGAAAUAAAAAGAUAUGGUCA .............(((((((........((((....)))).............(((((........)))))...............))))))). ( -9.86 = -11.50 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:02:32 2011