| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,282,772 – 4,282,877 |
| Length | 105 |
| Max. P | 0.929445 |
| Location | 4,282,772 – 4,282,877 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 64.89 |
| Shannon entropy | 0.60482 |
| G+C content | 0.42886 |
| Mean single sequence MFE | -25.28 |
| Consensus MFE | -7.58 |
| Energy contribution | -7.58 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.51 |
| Structure conservation index | 0.30 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.35 |
| SVM RNA-class probability | 0.929445 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4282772 105 + 23011544 AUGUAUUAGGUGUUUUCUUAGGUCUCAUUUCUA-CAAGAACAAUUGCUGGAAACAUAUUCCUGGCCUGAAUUACACCGCA-UUUGUUUCGAGUGCACUGCACUCCCC .((((...(((((....(((((((...((((((-(((......))).)))))).........)))))))...)))))(((-((((...)))))))..))))...... ( -26.70, z-score = -2.13, R) >droEre2.scaffold_4929 4359586 89 + 26641161 --------------UACUUUGAAGGGUUUUCUCUAGUUUUCUCUUAC---AAACACAAUUGCCUCAUGAAAGGCGCCCUG-UUUUUUUCGAGUGCACUGCACUCCCC --------------........(((((........((((........---))))......((((......))))))))).-........((((((...))))))... ( -20.30, z-score = -1.73, R) >droYak2.chr2L 4312963 91 + 22324452 -------------UUAAAUAAGCGUGUUUCUUUCGCUUUAGUGUUAC---ACACACAAUCGCCACAUGAACUGCACCAAGGUUUUUUUAGAGUGCACUGCACUCCCC -------------.((((.(((((((((((....((..(.((((...---..)))).)..)).....)))..))))....)))).))))((((((...))))))... ( -16.40, z-score = -0.35, R) >droSec1.super_5 2380611 106 + 5866729 AUUUAUUAGGUGUUUUCUUAGGACUCAUUGCUACCAUUAACAAUUGCUGGCAACACAUUCCUGCCCAGAAAUACACCGCA-UUUUUUUCGAGUGCACUGCACUCCCC ........(((((((((((((((....((((((.((........)).)))))).....)))))...))))).)))))...-........((((((...))))))... ( -29.00, z-score = -4.25, R) >droSim1.chr2L 4203193 106 + 22036055 ACUUAUGAGGUGUUUUCUUAGGACUCAUUGCUAGCAAUAACAAUUGCUGGCAACACAAUCCUGUCCAGAAAUACAACGCA-UUUGUUUCGAGUGCACUGCACUCCCC ((..(((..(((((((..(((((....(((((((((((....))))))))))).....)))))....)))))))....))-)..))...((((((...))))))... ( -34.00, z-score = -4.06, R) >consensus A__UAU_AGGUGUUUUCUUAGGACUCAUUGCUACCAUUAACAAUUGCUGGAAACACAAUCCUGUCCUGAAAUACACCGCA_UUUUUUUCGAGUGCACUGCACUCCCC .........................................................................................((((((...))))))... ( -7.58 = -7.58 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:16:00 2011