| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,286,379 – 4,286,479 |
| Length | 100 |
| Max. P | 0.582950 |
| Location | 4,286,379 – 4,286,479 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 96.64 |
| Shannon entropy | 0.04591 |
| G+C content | 0.50347 |
| Mean single sequence MFE | -26.83 |
| Consensus MFE | -26.10 |
| Energy contribution | -26.43 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.06 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.582950 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4286379 100 - 24543557 AGUCAAUUGGUAGAGAGUAGUCAACGGGUGUGGUGAUUUCGUUGGCCUGUUUGGUUUGUUCACCCGGGUAUGGUCUUCGUUCGCAGUUUCCGUUUCCAGU .....(((((..((......))((((((....((((...((..((((((..(((.........)))..)).))))..)).))))....)))))).))))) ( -24.50, z-score = -0.54, R) >droSim1.chr3L 3828735 98 - 22553184 AGUCAAUAGGU--AGAGUAGUCAACGGGUGUGGUGAUUUCGUUGGCCUGUUUGGUUUGUUCACCCGGGUAUGGUCUUCGUUCGCCGUUUCCGUUUCCGGU ...........--......(..((((((..((((((...((..((((((..(((.........)))..)).))))..)).))))))..))))))..)... ( -28.00, z-score = -1.32, R) >droSec1.super_2 4286090 98 - 7591821 AGUCAAUAGGU--AGAGUAGUCAACGGGUGUGGUGAUUUCGUUGGCCUGUUUGGUUUGUUCACCCGGGUAUGGUCUUCGUUCGCCGUUUCCGUUUCCGGU ...........--......(..((((((..((((((...((..((((((..(((.........)))..)).))))..)).))))))..))))))..)... ( -28.00, z-score = -1.32, R) >consensus AGUCAAUAGGU__AGAGUAGUCAACGGGUGUGGUGAUUUCGUUGGCCUGUUUGGUUUGUUCACCCGGGUAUGGUCUUCGUUCGCCGUUUCCGUUUCCGGU ...................(..((((((..((((((...((..((((((..(((.........)))..)).))))..)).))))))..))))))..)... (-26.10 = -26.43 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:02:31 2011