| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,268,071 – 4,268,174 |
| Length | 103 |
| Max. P | 0.776598 |
| Location | 4,268,071 – 4,268,174 |
|---|---|
| Length | 103 |
| Sequences | 8 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.38 |
| Shannon entropy | 0.34060 |
| G+C content | 0.47760 |
| Mean single sequence MFE | -23.36 |
| Consensus MFE | -15.37 |
| Energy contribution | -15.69 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.776598 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4268071 103 + 24543557 UUCCCAUCUUGACCAACAAGUCACCCAUCCGGCAUUUAGCACUGUUGUUAAUACUGUUACCUCAGACUAACGGUGCUGGCCACCUGACUUGACACUUUUCACC----------------- ................(((((((.....(((((..((((((....)))))).(((((((........)))))))))))).....)))))))............----------------- ( -24.90, z-score = -2.69, R) >droPer1.super_40 628800 120 + 810552 UUUCCAGCUUCGCUGACAAGUCACCCGCCAAGCAUUUAGCACUGUUGUUAAUACUGUUACCUCAGCCUAACGGUUUUCACUCCCUGACUUUACACUUUUCAGCCUUUUCAUGGCACUCAU ....((((...))))..((((((.......((((.((((((....))))))...)))).....((((....)))).........))))))...........(((.......)))...... ( -21.50, z-score = -1.37, R) >dp4.chrXR_group8 8436321 120 + 9212921 UUUCCAGCUUCGCUGACAAGUCACCCGCCAAGCAUUUAGCACUGUUGUUAAUACUGUUACCUCAGCCUAACGGUUUUCACUCCCUGACUUUACACUUUUCAGCCUUUUCAUGGCACUCAU ....((((...))))..((((((.......((((.((((((....))))))...)))).....((((....)))).........))))))...........(((.......)))...... ( -21.50, z-score = -1.37, R) >droAna3.scaffold_13337 2340787 97 + 23293914 ----CAACUUGGCCGGCAAGUCACUUAGCCAACAUUUAGCACUGUUGUUAAUACUGUUACCUCAGCCUAACGGUAAUCCCCGCCUGACUUGACACUUUUCG------------------- ----..........(.(((((((.(((((.((((........)))))))))((((((((........)))))))).........))))))).)........------------------- ( -19.20, z-score = -0.76, R) >droEre2.scaffold_4784 6984645 103 + 25762168 CUCCCAUCUUGGCCGACAAGUCACCUAUCCGGCAUUUAGCACUGUUGUUAAUACUGUUACCUCAGCCUAACGGUGCUGGCCACCUGACUUGACACUUUUCACC----------------- ...((.....))....(((((((.....(((((..((((((....)))))).(((((((........)))))))))))).....)))))))............----------------- ( -25.10, z-score = -1.82, R) >droYak2.chr3L 4849510 103 + 24197627 CUCCCAACUUGGCCAACAAGUCACCCAUCCGGCAUUUGGCACUGUUGUUAAUACUGUUACCUCAGCCUAACGGUGCUGGCCACCUGACUUGACACUUUUCACC----------------- ...((.....))....(((((((.......(((....((((((((((......(((......)))..)))))))))).)))...)))))))............----------------- ( -24.90, z-score = -1.11, R) >droSec1.super_2 4267903 103 + 7591821 UUCCCAUCUUGACCAACAAGUCACACAUCCGGCAUUUAGCACUGUUGUUAAUACUGUUACCUCAGCCUAACGGUGCUGGCCACCUGACUUGACACUUUUCACC----------------- ................(((((((.....(((((..((((((....)))))).(((((((........)))))))))))).....)))))))............----------------- ( -24.90, z-score = -2.58, R) >droSim1.chr3L 3810316 103 + 22553184 UUCCCAUCUUGACCAACAAGUCACACAUCCGGCAUUUAGCACUGUUGUUAAUACUGUUACCUCAGCCUAACGGUGCUGGCCACCUGACUUGACACUUUUCACC----------------- ................(((((((.....(((((..((((((....)))))).(((((((........)))))))))))).....)))))))............----------------- ( -24.90, z-score = -2.58, R) >consensus UUCCCAUCUUGGCCAACAAGUCACCCAUCCGGCAUUUAGCACUGUUGUUAAUACUGUUACCUCAGCCUAACGGUGCUGGCCACCUGACUUGACACUUUUCACC_________________ ................(((((((............((((((....))))))((((((((........)))))))).........)))))))............................. (-15.37 = -15.69 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:02:30 2011