| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,264,596 – 4,264,761 |
| Length | 165 |
| Max. P | 0.905457 |
| Location | 4,264,596 – 4,264,761 |
|---|---|
| Length | 165 |
| Sequences | 6 |
| Columns | 167 |
| Reading direction | forward |
| Mean pairwise identity | 76.42 |
| Shannon entropy | 0.45654 |
| G+C content | 0.56682 |
| Mean single sequence MFE | -56.43 |
| Consensus MFE | -32.47 |
| Energy contribution | -35.34 |
| Covariance contribution | 2.87 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.18 |
| SVM RNA-class probability | 0.905457 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4264596 165 + 24543557 GUGGCCAUUUCCCAUUUUCCCCUCGGCCAUUCCGGAGACGGACCCGUUGCACUCCGCUUUGGAGCCACGACAUCGGAGAUGGCGCACCGCGGGAGGAAACUCCAUUAUUAUCCGAUCCCACUAACCGCUAUAAGAUGAGUGGUUCGC--CCAUUAUGUCGGCGGAUU ((((((((((((............((....((((....)))).))((((..((((.....))))...))))...))))))))).)))....((((....))))..........(((((....(((((((........))))))).((--(.........)))))))) ( -59.80, z-score = -1.82, R) >droSim1.chr3L 3804635 165 + 22553184 UUGGCUAUCUCCCAUUUUCCCCCCGGCCAUUCCGGAGCCGGACCCGUUGCACUCCGCUUGGGAGCCACGACAUCGGAGAUGGCGCACCGCUGGAGUAAACUCCAUUAUCAUUCGAUCCCACUAACCGCUAUAAGAUGAGUGGGUCGC--CCAUUAUGUCGGCGGAUU .(((((((((((..........((((((......).)))))....((((..((((.....))))...))))...))))))))).))(((((((((....)))).........(((.((((((...(.......)...))))))))).--..........)))))... ( -59.70, z-score = -1.62, R) >droSec1.super_2 4261594 165 + 7591821 UUGGCCAUCUCCCAUUUUCCCCCCGGCCAUUCCGGAGCCGGACCCGUUGCACUCCGCUUGGGAGCCACGACAUCGGAGAUGGCGCACCGCUGGAGGAAACUCCAUUAUCAUCCGAUCCCACUAACCGCUAUAAGAUGAGUGGGUCGC--CCAUUAUGUCGGCGGAUU .(((((((((((..........((((((......).)))))....((((..((((.....))))...))))...))))))))).))(((((((((....)))).........(((.((((((...(.......)...))))))))).--..........)))))... ( -65.70, z-score = -2.52, R) >droYak2.chr3L 4841016 147 + 24197627 UUGGCCAUUUCCCAUUU--CCCCCGGCUUUUCCGUAGCCGGACCCGUUGCACUCCGCUUUGGAGCCACGAC----------------UGCGGGCGCCAACUCCAUUAUCAUCCGAUCCCACUAACCGCUAUAAGUUGAGUGGGUCGC--CCAUUAUGUCGGCGGAUU (((((............--...((((((.......)))))).(((((..(.((((.....))))....)..----------------.))))).)))))..........((((((.(((((((((........))).))))))))((--(.........))))))). ( -47.30, z-score = -1.17, R) >droEre2.scaffold_4784 6977844 163 + 25762168 UUGGCCAUUUCCCAUUU--CCCCUGGCCAUUCCGGAGCCGGACCCGUUGCACUCCGCUUUGGAAUCACGACAUCUGGGAUGGCGCAUCGCGGGAGGCAACUCCAUUAUCAUCCGAUCCCACUAACCGCUAUAAGAUGAGUGGGUCGC--CCAUUAUGUCGGCUGAUU .((((((..........--....))))))(((((((((.(((..........))))))))))))...((((((.(((((((((((...)))((((....))))....)))))(((.((((((...(.......)...))))))))).--)))..))))))....... ( -57.94, z-score = -1.15, R) >droAna3.scaffold_13337 2337969 140 + 23293914 ----------GCAGCCGCAGCCACAGCCA---CAAGUCCGGACCCGUUGUAUAUCACCCCGGAAUAGUGGCA-----AGCGGU-UAAAAGAGGCGGACGCUCCAUUAUUUGCCGAUCCCACUAGC--------GAUGAGUGGGUCGCGUCCAUUAUGACAGCAAAUU ----------((.(((..((((.(.((((---(...(((((.................)))))...))))).-----.).)))-)......)))((((((..((.....))..((.((((((...--------....)))))))))))))).........))..... ( -48.13, z-score = -2.21, R) >consensus UUGGCCAUUUCCCAUUUUCCCCCCGGCCAUUCCGGAGCCGGACCCGUUGCACUCCGCUUUGGAGCCACGACAUCGGAGAUGGCGCACCGCGGGAGGAAACUCCAUUAUCAUCCGAUCCCACUAACCGCUAUAAGAUGAGUGGGUCGC__CCAUUAUGUCGGCGGAUU .(((((..................))))).((((....))))....((((.((((.....))))...((((((....(((((.........((((....)))).........(((.((((((...(.......)...)))))))))...)))))))))))))))... (-32.47 = -35.34 + 2.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:02:28 2011