| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,244,939 – 4,245,040 |
| Length | 101 |
| Max. P | 0.828029 |
| Location | 4,244,939 – 4,245,040 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 99.34 |
| Shannon entropy | 0.00909 |
| G+C content | 0.45215 |
| Mean single sequence MFE | -25.17 |
| Consensus MFE | -25.17 |
| Energy contribution | -25.17 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.31 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.828029 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4244939 101 - 24543557 GCCAGCUUGGAGCUGAACUUCUUCUUUUGCUUUUCCUUCUCGUGCUCCUUUUGGGUGAGCAUAUUCUCCUUCUCGUUCAGCUUGAAAGUCAGCUCUUCAAU ((..((((.(((((((((.....(....)............((((((((....)).))))))............)))))))))..))))..))........ ( -25.10, z-score = -1.18, R) >droSec1.super_2 4242019 101 - 7591821 GCCAGCUUGGAGCUGAACUUCUUCUUUUGUUUUUCCUUCUCGUGCUCCUUUUGGGUGAGCAUAUUCUCCUUCUCGUUCAGCUUGAAAGUCAGCUCUUCAAU ((..((((.(((((((((.....(....)............((((((((....)).))))))............)))))))))..))))..))........ ( -25.30, z-score = -1.57, R) >droSim1.chr3L 3784291 101 - 22553184 GCCAGCUUGGAGCUGAACUUCUUCUUUUGCUUUUCCUUCUCGUGCUCCUUUUGGGUGAGCAUAUUCUCCUUCUCGUUCAGCUUGAAAGUCAGCUCUUCAAU ((..((((.(((((((((.....(....)............((((((((....)).))))))............)))))))))..))))..))........ ( -25.10, z-score = -1.18, R) >consensus GCCAGCUUGGAGCUGAACUUCUUCUUUUGCUUUUCCUUCUCGUGCUCCUUUUGGGUGAGCAUAUUCUCCUUCUCGUUCAGCUUGAAAGUCAGCUCUUCAAU ((..((((.(((((((((.....(....)............((((((((....)).))))))............)))))))))..))))..))........ (-25.17 = -25.17 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:02:27 2011