| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,233,178 – 4,233,288 |
| Length | 110 |
| Max. P | 0.943576 |
| Location | 4,233,178 – 4,233,288 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 70.97 |
| Shannon entropy | 0.55491 |
| G+C content | 0.36645 |
| Mean single sequence MFE | -18.94 |
| Consensus MFE | -10.74 |
| Energy contribution | -11.36 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.49 |
| SVM RNA-class probability | 0.943576 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4233178 110 - 24543557 --UUUCCCGCUAACACGCUUACGUACACCCUUAAAAAUGCAGGUGCUACUAAUGGAUCUUUUUAGAAUCGCUGAGCAAUACUAAACACCUGCUUAUCAAUAUUUGUACGAGC --......((......))...((((((...........((((((((((....))).....(((((.((.((...)).)).))))))))))))...........))))))... ( -21.75, z-score = -1.62, R) >droAna3.scaffold_13337 14657904 97 - 23293914 -------UGACGAAAUAUUUCAGUGAAAUC-GAUUCAAGUAUGAGUUAUAAGUGGGUGUCUAUCGUAUCAGACAGUUUUCUGGGAAACUUCUACGGC-------GUAAAAAC -------..(((..(((.((((.((((...-..))))....)))).)))..((((((((((........)))))(((((....))))).)))))..)-------))...... ( -17.00, z-score = 0.45, R) >droEre2.scaffold_4784 6945597 111 - 25762168 UUUUUCCUGCUAAUACGAUUACUUAC-ACCCCAAAAACGCAGGUGCUACUAAUAGAUCUUUUUAUAAUCGCUGAGCAAUACUACCCACCUGCUUAUCUCUAUUUGUAAGAAU .....................(((((-(..........(((((((......(((((....)))))....((...)).........)))))))...........))))))... ( -17.00, z-score = -1.95, R) >droYak2.chr3L 4808043 112 - 24197627 UUUUUCCUGCUAAUACGAUUAUUUACAACCCCAAAAAUGCAGGUGUUACUAAUAGAUCUUUUUAUAAUCGCUGAGCAAUACAACCCACCUGCUUAUCAGUAUUUGUAAGAGC ...(((.(((.((((((((...................(((((((......(((((....)))))....((...)).........)))))))..))).))))).))).))). ( -18.00, z-score = -1.04, R) >droSec1.super_2 4229930 108 - 7591821 ---UUCCCGCUAAUACGCUUACUUACACCC-CAAAAAUGCAGGUGUUACUAAAAGAUCUAUUUAUAAUCGCUGAGCAAUACUAAACACCUGCUUAUCAAUACUUGUAAGAGC ---.....((......))...((((((...-.......(((((((((.......(((.........)))((...)).......)))))))))...........))))))... ( -20.40, z-score = -2.48, R) >droSim1.chr3L_random 220538 109 - 1049610 --UUUCCCGCUAAUACGUUUACUUACACCC-CAAAAAUGCAGGUGUUACUAAAAGAUCUAUUUAUAAUCGCUGAGCAAUACUAAACACCUGCUUAUCAAUAUUUGUAAGAGC --...................((((((...-.......(((((((((.......(((.........)))((...)).......)))))))))...........))))))... ( -19.50, z-score = -2.05, R) >consensus __UUUCCCGCUAAUACGAUUACUUACAACC_CAAAAAUGCAGGUGUUACUAAUAGAUCUUUUUAUAAUCGCUGAGCAAUACUAAACACCUGCUUAUCAAUAUUUGUAAGAGC .....................((((((...........(((((((...........((..............))...........)))))))...........))))))... (-10.74 = -11.36 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:02:25 2011