| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,221,721 – 4,221,817 |
| Length | 96 |
| Max. P | 0.804147 |
| Location | 4,221,721 – 4,221,817 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 85.58 |
| Shannon entropy | 0.25619 |
| G+C content | 0.43940 |
| Mean single sequence MFE | -23.53 |
| Consensus MFE | -19.73 |
| Energy contribution | -19.89 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.804147 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4221721 96 - 24543557 CUAGAUUGGAUCUGAAUGAACUUCCUAAAGUGACC-CGGCCACGCGCACAGAAAUAACUAGUAUAAACCGUGCCCAGUUGGUUUUGGCCAAUCUUGU ..(((((((.((.((((.((((.......(((...-....)))(.((((....................)))).))))).)))).)))))))))... ( -20.55, z-score = -0.19, R) >droSec1.super_2 4218494 97 - 7591821 CUAGAUUGGAUCUGAAUGAACUUCCUAAAGUGACUAAAGCCACGCGCACAGAUAUAACUAGUAUAAACCGUGCCCAGUUGGUUUAGGCCAAUCUUGU ..(((((((.(((((((.((((.......(((........)))((((....((((.....)))).....))))..)))).))))))))))))))... ( -26.20, z-score = -2.55, R) >droYak2.chr3L 4796227 96 - 24197627 CUAGAUUGGAUCUGAAUGAACUUCCUAAAGUGACC-CGGCCACGCGCACAGAAAUAACUAGUAUAAACCGUGCCCGGUUGGUUUAGGCCAAUCUUGC ..(((((((.((.....))....((((((.(((((-.(((.(((...((((......)).))......)))))).))))).)))))))))))))... ( -26.60, z-score = -1.77, R) >droEre2.scaffold_4784 6934175 96 - 25762168 CUAGAUUGGAUCUGAAUGAACUUCCUAAAGUGACC-CGGCCACGCGCACAGAAAUAACUAGUAUAAACCGUGUCUGGUUGGUUUAGGCCAAUCUUGU ..(((((((.((((((...((((....))))...(-((((((.((((......................)))).))))))))))))))))))))... ( -26.05, z-score = -1.67, R) >droAna3.scaffold_13337 14645385 90 - 23293914 UUAGAUUGGAUCUGAAUGAACUUCCUAAUACGACC-------UGAGCUCUGAUAUAACCUGAAAUAACCGUGUCUGGUUAGUUUUGGCCAAUCUACA .((((((((.((.....(((((.((..(((((...-------..........................)))))..))..))))).)))))))))).. ( -18.25, z-score = -1.45, R) >consensus CUAGAUUGGAUCUGAAUGAACUUCCUAAAGUGACC_CGGCCACGCGCACAGAAAUAACUAGUAUAAACCGUGCCCGGUUGGUUUAGGCCAAUCUUGU ..(((((((.(((((((.((((.......(((.(....).)))(.((((....................)))).))))).))))))))))))))... (-19.73 = -19.89 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:02:24 2011