| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,281,535 – 4,281,631 |
| Length | 96 |
| Max. P | 0.946087 |
| Location | 4,281,535 – 4,281,631 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 64.50 |
| Shannon entropy | 0.65718 |
| G+C content | 0.52456 |
| Mean single sequence MFE | -20.47 |
| Consensus MFE | -8.99 |
| Energy contribution | -8.63 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.52 |
| SVM RNA-class probability | 0.946087 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4281535 96 - 23011544 CUCCCCCUCUCCCUAACACACCAACGACGAGCAAACCAAGUCACUAAUUUCUGAC-UUCAGACAGGUGAACGCCUCCCAAAGUGGCUCGUUCGUCUA .........................(((((((......(((((((....((((..-..)))).((((....)))).....))))))).))))))).. ( -23.70, z-score = -2.97, R) >droAna3.scaffold_12916 1492630 85 - 16180835 ------------AUAGAUGUUCGGCUAAUCCCGGGGCAGCCCUAACGCUUGCCACAUCCAGAAGGGUGAAUGACAUGACGAGUUUUUUAUGCUUUUC ------------...(((((((((......))))((((((......)).))))))))).(((((.(((((.(((.......))).))))).))))). ( -22.60, z-score = -0.70, R) >droEre2.scaffold_4929 4358314 95 - 26641161 --CACCGGCCCCCGCACCCACCGCCGACCGCCAUUCGAAGUCACUAAUUUCUGACUUUCAGACAGGUGAACGCCUCCCAAAGUGGCUCGUUCGUCUA --....(((..(.((.......)).)...)))...(((.((((((....((((.....)))).((((....)))).....)))))))))........ ( -21.80, z-score = -0.57, R) >droYak2.chr2L 4311705 79 - 22324452 ----------------CUCCCCCUCUUCUCUCGA-CGAAGUCACUAAUUUCUGAC-UUCAGACAGGUGAACGCCUCGCAAAGUGGCUCGUUCGUCUA ----------------................((-((((((((((....((((..-..)))).((((....)))).....)))))))...))))).. ( -21.80, z-score = -2.05, R) >droSec1.super_5 2379392 84 - 5866729 ------------CCACCCCUCUCCCUCCUAGCAAACCAAGUCACUAAUUUCUGAU-UUCAGACAGGUGAACGCCUCCCAAAGUGGCUCGUUCGUCUA ------------................((((.(((..(((((((....((((..-..)))).((((....)))).....))))))).))).).))) ( -16.70, z-score = -1.79, R) >droSim1.chr2L 4201974 84 - 22036055 ------------CCACCCCUCUCCCUCCUCACAAGCCAAGUCACUAAUUUCUGAC-UUCAGACAGGUGAACGCCUUCCAAAGUGGCUCGUUCGUCUA ------------..................((.(((..(((((((....((((..-..)))).((((....)))).....))))))).))).))... ( -16.20, z-score = -1.28, R) >consensus ____________CCAACCCUCCCCCUACUCCCAAACCAAGUCACUAAUUUCUGAC_UUCAGACAGGUGAACGCCUCCCAAAGUGGCUCGUUCGUCUA .................................................((((.....)))).((..(((((((.(.....).)))..))))..)). ( -8.99 = -8.63 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:15:59 2011