| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,192,006 – 4,192,123 |
| Length | 117 |
| Max. P | 0.982772 |
| Location | 4,192,006 – 4,192,123 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 72.57 |
| Shannon entropy | 0.51914 |
| G+C content | 0.32157 |
| Mean single sequence MFE | -28.02 |
| Consensus MFE | -12.70 |
| Energy contribution | -14.15 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.36 |
| Mean z-score | -2.48 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.11 |
| SVM RNA-class probability | 0.982772 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4192006 117 + 24543557 UAUUUGACAAUAGGCGUUUGCUUAGAAAAG-AAAUAUUACGUAU-ACGUAAAAAGUUCUUUUGUGUUAUUUUGUGGCAUACAUUUAUGCGCAAAAUGGC-CAAAUCAUAAAUCCUGUGAA ..((((((..(((((....))))).(((((-((...(((((...-.)))))....)))))))))(((((((((((.((((....)))))))))))))))-))))(((((.....))))). ( -29.00, z-score = -2.55, R) >droEre2.scaffold_4784 6902750 116 + 25762168 GAUUCGAUAAUAGGCGUUUGCUUGGGAAAA-CAAUAUUACGUAU-ACGUAAAAA-UUUGUUUGUGAUAUUUUGUAGCAUACAUUUAUGCGCACAGUGGA-AAACCCAUAAAUCGUGUGAA ..........((.(((.((...((((.(((-(((..(((((...-.)))))...-.))))))....((((.(((.(((((....)))))))).))))..-...))))..)).))).)).. ( -24.10, z-score = -0.30, R) >droYak2.chr3L 4764102 114 + 24197627 GAUUCUAUAAUAGGCGUUUGCUUAGGAAAU-GAAUAUUACGUAU-ACGUAAU---CUCUUUUGUGUUAUUUUGUAGCAUACAUUUAUGCGCAAAAUGGC-AUAAUCAUAAAACCUGUGAA .((((.....(((((....)))))......-))))((((((...-.))))))---.....((((((((((((((.(((((....)))))))))))))))-))))(((((.....))))). ( -30.50, z-score = -3.38, R) >droSec1.super_2 4184662 115 + 7591821 GGUUCGACAAUAGGCGUUCGCUUAGAAAAA-UAAUAUUACGUAU-ACGUAAAAA--GCUCUUGAGUUAUUUUGUUGCAUACAUUUAUGCGCAAAAUGGC-CAAAUCAUAAAAUCUAUGAA ((((......(((((....)))))......-.....(((((...-.)))))..)--))).(((.((((((((((.(((((....)))))))))))))))-))).(((((.....))))). ( -26.00, z-score = -2.11, R) >droSim1.chr3L 3733578 116 + 22553184 GAUUCGACAAUAGGCGUUUGCUUAAAAAAAAUAAUAUUACGUAU-ACGUAAAAA--GCUCUUGGGUUAUUUUGUUGCAUACAUUUAUGCGCAAAAUGAC-CAAAUCAUAAAAUCUGUUAA ((((...((((((((....)))))............(((((...-.)))))...--....)))(((((((((((.(((((....)))))))))))))))-).)))).............. ( -27.00, z-score = -2.91, R) >droMoj3.scaffold_6654 781225 110 - 2564135 UAUUCAAUGAUAAG-GUUCA--UAGAACAG---GUUCUGCAGAUCACUUAAAAG--GCUCGUGU-UUAAACUGGUUCACUUAAUACUAAAUGAAUUGGUUCGGCUCAUGAGCCGUAUAU- .............(-(((..--(((((...---.)))))..))))........(--(((((((.-(..(((..(((((.(((....))).)))))..)))..)..))))))))......- ( -31.50, z-score = -3.60, R) >consensus GAUUCGACAAUAGGCGUUUGCUUAGAAAAA_UAAUAUUACGUAU_ACGUAAAAA__GCUCUUGUGUUAUUUUGUUGCAUACAUUUAUGCGCAAAAUGGC_CAAAUCAUAAAACCUGUGAA ..........(((((....)))))............(((((.....))))).........(((.((((((((((.(((((....))))))))))))))).)))................. (-12.70 = -14.15 + 1.45)
| Location | 4,192,006 – 4,192,123 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 72.57 |
| Shannon entropy | 0.51914 |
| G+C content | 0.32157 |
| Mean single sequence MFE | -21.92 |
| Consensus MFE | -9.79 |
| Energy contribution | -9.02 |
| Covariance contribution | -0.77 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.845238 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4192006 117 - 24543557 UUCACAGGAUUUAUGAUUUG-GCCAUUUUGCGCAUAAAUGUAUGCCACAAAAUAACACAAAAGAACUUUUUACGU-AUACGUAAUAUUU-CUUUUCUAAGCAAACGCCUAUUGUCAAAUA .............((((..(-((...((((((((((....))))).............(((((((....(((((.-...)))))...))-)))))....))))).)))....)))).... ( -23.50, z-score = -2.50, R) >droEre2.scaffold_4784 6902750 116 - 25762168 UUCACACGAUUUAUGGGUUU-UCCACUGUGCGCAUAAAUGUAUGCUACAAAAUAUCACAAACAAA-UUUUUACGU-AUACGUAAUAUUG-UUUUCCCAAGCAAACGCCUAUUAUCGAAUC ......((((..((((((..-.....((((.(((((....))))))))).........((((((.-...(((((.-...)))))..)))-)))............)))))).)))).... ( -23.00, z-score = -2.32, R) >droYak2.chr3L 4764102 114 - 24197627 UUCACAGGUUUUAUGAUUAU-GCCAUUUUGCGCAUAAAUGUAUGCUACAAAAUAACACAAAAGAG---AUUACGU-AUACGUAAUAUUC-AUUUCCUAAGCAAACGCCUAUUAUAGAAUC ......(((((((((((...-((...((((((((((....))))).................(((---((((((.-...)))))).)))-.........))))).))..))))))))))) ( -24.70, z-score = -3.29, R) >droSec1.super_2 4184662 115 - 7591821 UUCAUAGAUUUUAUGAUUUG-GCCAUUUUGCGCAUAAAUGUAUGCAACAAAAUAACUCAAGAGC--UUUUUACGU-AUACGUAAUAUUA-UUUUUCUAAGCGAACGCCUAUUGUCGAACC .............((((..(-((...((((((((((....))))).............((((..--...(((((.-...))))).....-)))).....))))).)))....)))).... ( -19.40, z-score = -0.55, R) >droSim1.chr3L 3733578 116 - 22553184 UUAACAGAUUUUAUGAUUUG-GUCAUUUUGCGCAUAAAUGUAUGCAACAAAAUAACCCAAGAGC--UUUUUACGU-AUACGUAAUAUUAUUUUUUUUAAGCAAACGCCUAUUGUCGAAUC ......(((((.(..((..(-((...((((((((((....))))).............((((..--...(((((.-...))))).....))))......))))).))).))..).))))) ( -20.40, z-score = -1.01, R) >droMoj3.scaffold_6654 781225 110 + 2564135 -AUAUACGGCUCAUGAGCCGAACCAAUUCAUUUAGUAUUAAGUGAACCAGUUUAA-ACACGAGC--CUUUUAAGUGAUCUGCAGAAC---CUGUUCUA--UGAAC-CUUAUCAUUGAAUA -......(((((.((....((((...((((((((....))))))))...))))..-.)).))))--)....................---.(((((.(--(((..-....)))).))))) ( -20.50, z-score = -1.29, R) >consensus UUCACAGGUUUUAUGAUUUG_GCCAUUUUGCGCAUAAAUGUAUGCAACAAAAUAACACAAAAGA__UUUUUACGU_AUACGUAAUAUUA_UUUUUCUAAGCAAACGCCUAUUAUCGAAUC ..........................((((((((((....)))))........................(((((.....)))))...............)))))................ ( -9.79 = -9.02 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:02:20 2011