Locus 6158

Sequence ID dm3.chr3L
Location 4,177,967 – 4,178,084
Length 117
Max. P 0.782666
window8468

overview

Window 8

Location 4,177,967 – 4,178,084
Length 117
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 72.88
Shannon entropy 0.53238
G+C content 0.45790
Mean single sequence MFE -30.10
Consensus MFE -21.16
Energy contribution -21.33
Covariance contribution 0.16
Combinations/Pair 1.41
Mean z-score -0.73
Structure conservation index 0.70
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.67
SVM RNA-class probability 0.782666
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 4177967 117 + 24543557
UUAUGUUCAAACGCCGACAAGGCGAGAUUCAACCAGUUAACGACUUGUUCAAUUUGUUCUUCAUUUGCGGACGGAGUUGCCACCUAAAUCACUCGGAGCUUCCAGGGUUGCGACUCA
...(((((...((((.....))))(((((.(((.((((...)))).))).))))).............)))))(((((((.((((.........((.....)).)))).))))))). ( -30.50, z-score =  -0.68, R)
>droEre2.scaffold_4784 6888492 117 + 25762168
UGACGUUCAAACGCCGCCAAGGCGAGAUUCAACCAGUUAAGGACUCGUCCAAUUUGCUUUUCAUUUGCGGACGGAGUUGCCACCCAAAUUAUACUGAGUUUACAGGGUUGCGACUCG
...(((((...((((.....))))................(((....))).....((.........)))))))(((((((.(((((((((......)))))...)))).))))))). ( -35.20, z-score =  -2.01, R)
>droYak2.chr3L 4749719 105 + 24197627
UUAUGUUCUAA------------GAGAUUCAACCAGUUGAAGACUCUUUCAAUUUGUCUUUCAUUUGCGGACGGAGUUGCCACCUAAAUUAUGCGGAGUUUCCAGGGUUGCGACUCA
...((((((((------------(.((....((.((((((((....)))))))).))...)).)))).)))))(((((((.(((((((((......)))))...)))).))))))). ( -26.40, z-score =  -0.84, R)
>droSec1.super_2 4170718 117 + 7591821
UUAUGUUUAAACGCCGCCAAGGCGAGAUUCAACCAGUUAAGGACUUGUUCAAUUUGUUCUUCAUUUGCGGACGGAGUUGCCACCUGAAUCACACUGAGCUUCCAGGGUUGCGACUCA
...........((((((.((((..(((((.(((.((((...)))).))).)))))..)))).....)))).))(((((((..((((..((.....)).....))))...))))))). ( -30.00, z-score =  -0.23, R)
>droSim1.chr3L 3719428 117 + 22553184
UUAUGUUCAAGCGCCGCCAAGGCGAGAUUCAACCAGUUAAGGACUUGUUCAAUUCGUUCUUCAUUUGCGGACGGAGUUGCCACCUAAAUCACACUGAGCUUCCAGGGUUGCGACUCA
...((..((((((((.....))))........((......)).))))..))...(((((.........)))))(((((((.((((...((.....)).......)))).))))))). ( -31.20, z-score =  -0.47, R)
>droWil1.scaffold_180708 7992419 116 + 12563649
GUCUGUUUAAAUAAAGCGAAAAUGAAAGAAAAUUAAUGGUUUUUUGUUGUUGUAAGCUCUCCUGUAUGAAAGGGAGCGGCCGCUUCAAAAACUAUGA-CUCGCGCGGUCGCAGCUCA
..............((((((((..................))))))))(((((..((((.(((.......)))))))((((((..............-.....)))))))))))... ( -27.28, z-score =  -0.15, R)
>consensus
UUAUGUUCAAACGCCGCCAAGGCGAGAUUCAACCAGUUAAGGACUUGUUCAAUUUGUUCUUCAUUUGCGGACGGAGUUGCCACCUAAAUCACACUGAGCUUCCAGGGUUGCGACUCA
...(((((...((((.....))))(((((.(((.((((...)))).))).))))).............)))))(((((((.((((...................)))).))))))). (-21.16 = -21.33 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:02:18 2011