| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,177,129 – 4,177,181 |
| Length | 52 |
| Max. P | 0.862008 |
| Location | 4,177,129 – 4,177,181 |
|---|---|
| Length | 52 |
| Sequences | 3 |
| Columns | 53 |
| Reading direction | forward |
| Mean pairwise identity | 77.22 |
| Shannon entropy | 0.31970 |
| G+C content | 0.40784 |
| Mean single sequence MFE | -11.07 |
| Consensus MFE | -11.81 |
| Energy contribution | -10.93 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.31 |
| Mean z-score | -0.55 |
| Structure conservation index | 1.07 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.862008 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4177129 52 + 24543557 -CUCAGUUUAAGGCAGUGCUACAGUUGGUCACAAAAGUUAACCAGUUGUUGCU -................((.(((..((((.((....))..))))..))).)). ( -9.60, z-score = 0.17, R) >droEre2.scaffold_4784 6887627 52 + 25762168 -CUUGGUUUAGGGCAGUGCUACAGUUGGUCACAAAAGUUUACCAAUUGUCGUU -................((.(((((((((.((....))..))))))))).)). ( -10.40, z-score = -0.58, R) >droYak2.chr3L 4748860 53 + 24197627 UUUACUUUUAAAGUGCUGCCACAGUUGGUCACAAAAGUUUGCCAACUGUUGUU ..((((.....))))..((.(((((((((.((....))..))))))))).)). ( -13.20, z-score = -1.26, R) >consensus _CUAAGUUUAAGGCAGUGCUACAGUUGGUCACAAAAGUUUACCAAUUGUUGUU .................((.(((((((((.((....))..))))))))).)). (-11.81 = -10.93 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:02:17 2011