| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,173,174 – 4,173,224 |
| Length | 50 |
| Max. P | 0.823514 |
| Location | 4,173,174 – 4,173,224 |
|---|---|
| Length | 50 |
| Sequences | 11 |
| Columns | 50 |
| Reading direction | reverse |
| Mean pairwise identity | 84.76 |
| Shannon entropy | 0.33145 |
| G+C content | 0.60545 |
| Mean single sequence MFE | -17.02 |
| Consensus MFE | -12.14 |
| Energy contribution | -12.02 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.823514 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4173174 50 - 24543557 UGGGAUCCGCUUCGAUGUGCGGCUUGUCCCACAACCCGCUUUCCGUGGCC ((((((((((........))))...))))))....((((.....)))).. ( -18.00, z-score = -1.57, R) >droGri2.scaffold_15110 3099168 50 - 24565398 UGGGAUCAGUCUCAAUUUGCGGCUGAUCCCAAAUUCCACUCUCCGUUGCA (((((((((((.(.....).)))))))))))................... ( -19.30, z-score = -4.21, R) >droVir3.scaffold_13049 2047553 50 - 25233164 UGGGAUCAGAAUCGAUGUGUGGUUUGUCCCACAGACCGCUUUCGGUUGCC .........((((((...((((((((.....))))))))..))))))... ( -17.30, z-score = -1.74, R) >droWil1.scaffold_180949 3910189 50 - 6375548 UGGGAUCCGCUUCAAUAUGCGGUUUAUCCCAAAUACCGCUCUCUGUUGCC ((((((((((........))))...))))))......((........)). ( -15.20, z-score = -2.99, R) >droPer1.super_40 529440 50 - 810552 UGGGAUCCGCCUCGAUGUGCGGCCUGUCCCACAGACCGCUCUCAGUGGCC (((((((((((.....).))))...))))))....((((.....)))).. ( -18.00, z-score = -0.63, R) >dp4.chrXR_group8 8338070 50 - 9212921 UGGGAUCCGCCUCGAUGUGCGGCCUGUCCCACAGACCGCUCUCAGUGGCC (((((((((((.....).))))...))))))....((((.....)))).. ( -18.00, z-score = -0.63, R) >droAna3.scaffold_13337 14593620 50 - 23293914 UGGGAUCUGCCUCAAUGUGUGGCUUAUCCCACAGCCCGCUCUCCGUCGCC ((((((..(((.(.....).)))..))))))......((........)). ( -14.80, z-score = -1.47, R) >droEre2.scaffold_4784 6883604 50 - 25762168 UGGGAUCCGCUUCGAUGUGCGGCUUGUCCCACAACCCGCUUUCCGUGGCC ((((((((((........))))...))))))....((((.....)))).. ( -18.00, z-score = -1.57, R) >droYak2.chr3L 4744891 50 - 24197627 UGGGAUCCGCUUCGAUGUGCGGCUUGUCCCACAAACCGCUUUCCGUGGCC ((((((((((........))))...))))))....((((.....)))).. ( -18.20, z-score = -1.76, R) >droSec1.super_2 4165954 50 - 7591821 UGGGAUCCGCUUCGAUGUGCGGCUUGUCCCACAACCCGCUUUCCGUUGCC ((((((((((........))))...))))))......((........)). ( -15.20, z-score = -1.24, R) >droSim1.chr3L 3713951 50 - 22553184 UGGGAUCCGCUUCGAUGUGCGGCUUGUCCCACAACCCGCUUUCCGUUGCC ((((((((((........))))...))))))......((........)). ( -15.20, z-score = -1.24, R) >consensus UGGGAUCCGCUUCGAUGUGCGGCUUGUCCCACAAACCGCUUUCCGUGGCC ((((((((((........))))...))))))......((........)). (-12.14 = -12.02 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:02:17 2011