| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,161,927 – 4,161,978 |
| Length | 51 |
| Max. P | 0.568750 |
| Location | 4,161,927 – 4,161,978 |
|---|---|
| Length | 51 |
| Sequences | 5 |
| Columns | 54 |
| Reading direction | reverse |
| Mean pairwise identity | 94.64 |
| Shannon entropy | 0.09503 |
| G+C content | 0.60871 |
| Mean single sequence MFE | -15.00 |
| Consensus MFE | -15.00 |
| Energy contribution | -15.00 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.71 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.568750 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4161927 51 - 24543557 ---GGACACACUGACACCAUGUGCGGGAGGAACCCCGCUCUUGUGGCGAUUUCC ---...........(.(((((.(((((......)))))...))))).)...... ( -15.00, z-score = -0.71, R) >droEre2.scaffold_4784 6872453 51 - 25762168 ---GGACACACUGACACCAUGUGCGGGAGGAACCCCGCUCUUGUGGCGAUUGCC ---...........(.(((((.(((((......)))))...))))).)...... ( -15.00, z-score = -0.49, R) >droYak2.chr3L 4733379 54 - 24197627 AGGACACACACUGACACCAUGUGCGGGAGGAACCCCGCUCUUGUGGCGAUUUCC ..............(.(((((.(((((......)))))...))))).)...... ( -15.00, z-score = -0.39, R) >droSec1.super_2 4154890 51 - 7591821 ---GGACACACUGACACCAUGUGCGGGAGGAACCCCGCUCUUGUGGCGAUUACC ---...........(.(((((.(((((......)))))...))))).)...... ( -15.00, z-score = -0.97, R) >droSim1.chr3L 3702665 51 - 22553184 ---GGACACACUGACACCAUGUGCGGGAGGAACCCCGCUCUUGUGGCGAUUACC ---...........(.(((((.(((((......)))))...))))).)...... ( -15.00, z-score = -0.97, R) >consensus ___GGACACACUGACACCAUGUGCGGGAGGAACCCCGCUCUUGUGGCGAUUACC ..............(.(((((.(((((......)))))...))))).)...... (-15.00 = -15.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:02:16 2011