| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,281,329 – 4,281,418 |
| Length | 89 |
| Max. P | 0.799094 |
| Location | 4,281,329 – 4,281,418 |
|---|---|
| Length | 89 |
| Sequences | 6 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 76.27 |
| Shannon entropy | 0.41570 |
| G+C content | 0.41221 |
| Mean single sequence MFE | -23.16 |
| Consensus MFE | -11.01 |
| Energy contribution | -11.51 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.799094 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4281329 89 + 23011544 CAUACACGAUAAUCUCGACACCUCCUGGGCCUUUCGGCCCAAACAAA-UCGAGAUUUGGGCGAUUAUGAAAUUGGCAAUUAGUUGACUGU ((((..((..((((((((.......((((((....))))))......-))))))))....))..))))...(..((.....))..).... ( -25.52, z-score = -2.41, R) >droEre2.scaffold_4929 4358104 89 + 26641161 CAAACACGAUAAUCUCGACACCUCCUGGGCCUUUGAGCUCAAACAAA-UCGAGAUUUGGGCGAUUAUGAAAUUGGCAAUUAGUUGACUGU ......((((((((((((.......(((((......)))))......-))))))))..(.(((((....))))).).....))))..... ( -18.52, z-score = -0.47, R) >droSec1.super_5 2379186 89 + 5866729 CAUACACGAUAAUCUUGACACCUCCUGGGCUUUUCAGCCCAAACAAA-UCGAGAUUUGGGCGAUUAUGACAUUGGCAAUUAGUUGACUGU ((((..((..((((((((.......((((((....))))))......-))))))))....))..))))((((..((.....))..).))) ( -22.12, z-score = -1.81, R) >droSim1.chr2L 4201767 89 + 22036055 CAUACACGAUAAUCUCGACACCUCCUGGGCCUUUCAGCCCAAACAAA-UCGAGAUUUGGGCGAUUAUGAAAUUGGCAAUUAGUUGACUGU ((((..((..((((((((.......(((((......)))))......-))))))))....))..))))...(..((.....))..).... ( -22.02, z-score = -1.56, R) >dp4.chr4_group2 272324 82 + 1235136 --------AGAACAAGGCAAUCUUCUCAGUGCUUUGUUAGAAGCAAAAUUGUGAUUUUGGCGAUUAUGAAAUUGCCAAUUAGUUGCCUUC --------.....((((((((..((.(((((((((....))))))...))).))..(((((((((....)))))))))...)))))))). ( -25.40, z-score = -3.27, R) >droPer1.super_8 349570 82 - 3966273 --------AGAACAAGGCAAUCUUCUCAGUGCUUUGUUAGAAGCAAAAUUGUGAUUUUGGCGAUUAUGAAAUUGCCAAUUAGUUGCCUUC --------.....((((((((..((.(((((((((....))))))...))).))..(((((((((....)))))))))...)))))))). ( -25.40, z-score = -3.27, R) >consensus CAUACACGAUAAUCUCGACACCUCCUGGGCCUUUCAGCCCAAACAAA_UCGAGAUUUGGGCGAUUAUGAAAUUGGCAAUUAGUUGACUGU ..........((((((((.......(((((......))))).......))))))))..((((((((.............)))))).)).. (-11.01 = -11.51 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:15:58 2011