| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,109,434 – 4,109,531 |
| Length | 97 |
| Max. P | 0.636662 |
| Location | 4,109,434 – 4,109,531 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 93.95 |
| Shannon entropy | 0.10445 |
| G+C content | 0.53037 |
| Mean single sequence MFE | -28.46 |
| Consensus MFE | -26.40 |
| Energy contribution | -26.64 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.636662 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4109434 97 + 24543557 UACAUACGACACAGCUGAUGGACUGGCAACCUGCUCUCAACUGGGCGUUGUUGUCUCGUUGGACAUCUCUGUGUGGCUCUCGCAUCCGCUAAGUUCC ......(.((((((..((((..(.((((((.(((((......)))))..)))))).....)..)))).)))))).).....((....))........ ( -28.70, z-score = -0.80, R) >droEre2.scaffold_4784 6818174 95 + 25762168 --UAAAUUGCACAGCUGAUGGACUUGCAACCUGCUCUCAACUGGGCGUUGUUGUCUCGUUGGACAUCUCUGUGUGGCUCUCGCAUCCGCUAAAUUCC --....(..((((((..((((((..(((((..((((......))))))))).))).)))..)......)))))..).....((....))........ ( -26.00, z-score = -1.39, R) >droYak2.chr3L 4680141 95 + 24197627 --UAAAUUGCACAGCUGAUGGACUUGCAACCUGCUCUCAACUGGGCGUUGUUGUCUCGUCGGACAUCUCUGUGUGGCUCUCGCAUCCGCUAAAUUCC --....(..((((((((((((((..(((((..((((......))))))))).))).))))))......)))))..).....((....))........ ( -28.40, z-score = -2.19, R) >droSec1.super_2 4101969 95 + 7591821 --UGAAUUGCACAGCUGAUGGACUGGCAACCUGCUCUCAACUGGGCGUUGUUGUCUCGCUGGACAUCUCUGUGUGGCUCUCGCAUCCGCUAGGUUCC --.((.(..(((((..((((..(.((((((.(((((......)))))..)))))).....)..)))).)))))..).))..((....))........ ( -30.40, z-score = -0.79, R) >droSim1.chr3L 3648929 95 + 22553184 --UAAAUUGCACAGCUGAUGGACUGGCAACCUGCUCUCAACUGGGCGUUGUUGUCUCGCUGGACAUCUCUGUGUGGCUCUCGCAUCCGCUAAGUUCC --....(..(((((..((((..(.((((((.(((((......)))))..)))))).....)..)))).)))))..).....((....))........ ( -28.80, z-score = -1.15, R) >consensus __UAAAUUGCACAGCUGAUGGACUGGCAACCUGCUCUCAACUGGGCGUUGUUGUCUCGUUGGACAUCUCUGUGUGGCUCUCGCAUCCGCUAAGUUCC ......(..(((((..((((..(.((((((.(((((......)))))..)))))).....)..)))).)))))..).....((....))........ (-26.40 = -26.64 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:02:11 2011