| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,095,357 – 4,095,474 |
| Length | 117 |
| Max. P | 0.627935 |
| Location | 4,095,357 – 4,095,474 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.32 |
| Shannon entropy | 0.37095 |
| G+C content | 0.29235 |
| Mean single sequence MFE | -26.93 |
| Consensus MFE | -11.02 |
| Energy contribution | -11.94 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.45 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.627935 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4095357 117 - 24543557 AACCUGUAUGCAUACAAUUUUUAUUGAAAAUCGAUUGAUUCGUUUAUGUAAUUUGCACGAAGUGAAACACUUUGGUACAGAAAACUGUAGAACAGUUGUAUG---CAUAUAGAGUAAUUG .((((((((((((((((((((.((((.....)))).))...((((............(((((((...))))))).(((((....))))))))))))))))))---))))))).))..... ( -33.90, z-score = -4.32, R) >droSim1.chr3L 3634733 107 - 22553184 AACCUGUAUGCAUACAAUUUUUAUUGAAAAUCGAUUAAUUCAUAUAUGUAAUUUGCACGAAGUGAA----------ACAGAAAACUGUAGAACAGUUGUAUG---CAUAAAGUUUAAUUG ...((.(((((((((((((...................(((((...(((.....)))....)))))----------((((....)))).....)))))))))---)))).))........ ( -21.40, z-score = -1.75, R) >droSec1.super_2 4087946 120 - 7591821 AACCUGUAUGCAUACAAUUUUUAUUGAAAAUCGAUUAGUUCAUAUAUGUAAUUUGCACGAAGUGAAACAUAUAUGUACAGAAAACUGUAUAACAGUUGUAUGCAUCAUAUAGUUUAAUUG ...((((((((((((((((.(((.................(((((((((..((..(.....)..)))))))))))(((((....)))))))).)))))))))))...)))))........ ( -29.40, z-score = -2.92, R) >droYak2.chr3L 4665471 112 - 24197627 AACCUGUGUGCAUACAAUUCUUAUUGAAAAUCGAUUAAUUUAUGUGUGUAAUU-----AAAGUUAACCAUUUGGGUUCCAAAUACUGUAGCAAUGUUGUAUG---CAUAUGGAAUAAUUG ...(((((((((((((((....((((.....))))..................-----...((((...((((((...))))))....))))...))))))))---)))))))........ ( -24.80, z-score = -1.77, R) >droEre2.scaffold_4784 6803671 115 - 25762168 AACCUGAAUGCAUACAGUUUUUAAUGAAAAUCGACUAUUUUAUGUAUGUAGUUUGCACAAAGUGAAACAUGC--GUUCCGAAAACUGCAGAAAUAUUGUGUG---CAUGUAGAAUAAUUG ...(((.(((((((((((.(((.((((((........))))))...((((((((.......((.......))--.......)))))))).))).))))))))---))).)))........ ( -25.14, z-score = -1.49, R) >consensus AACCUGUAUGCAUACAAUUUUUAUUGAAAAUCGAUUAAUUCAUAUAUGUAAUUUGCACGAAGUGAAACAUUU__GUACAGAAAACUGUAGAACAGUUGUAUG___CAUAUAGAAUAAUUG ...(((((((((((((((.((((((.......(((((...........))))).......)))))).........(((((....))))).....))))))))...)))))))........ (-11.02 = -11.94 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:02:10 2011