| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,089,510 – 4,089,605 |
| Length | 95 |
| Max. P | 0.983518 |
| Location | 4,089,510 – 4,089,605 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 84.71 |
| Shannon entropy | 0.24142 |
| G+C content | 0.41178 |
| Mean single sequence MFE | -20.40 |
| Consensus MFE | -15.66 |
| Energy contribution | -16.48 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.72 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.14 |
| SVM RNA-class probability | 0.983518 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4089510 95 - 24543557 ACAGUACUUCUGGCGACUUCGAGUGCCAUUUAUACUUAACAUAUUUGGCACUUGACAAA---CUACUGCACACACGCCACAAAAGUCGAGUCACGAAU ...(.((((.(((((...((((((((((..(((.......)))..))))))))))((..---....))......)))))...)))))........... ( -24.60, z-score = -3.32, R) >droEre2.scaffold_4784 6798491 93 - 25762168 ACAGUACUUCAGGCCACCUCGAGUACCAUUUAUACUUAACAUAUUUGGCACUUGACAAAUAAAAACAGCACACACGCCAUAA-----UAGCCGCAUAU ...........(((....((((((.(((..(((.......)))..))).))))))............((......)).....-----..)))...... ( -15.50, z-score = -2.11, R) >droSec1.super_2 4082183 91 - 7591821 UCAGUACUUCAGGCGUCUUGGAGUGCCAUUUAUACUUAACAUAUUUGGCACUUGACAAA----AACAGCACACACGCCACAAAA---AAGUCGAGAAU .......(((.((((((...((((((((..(((.......)))..)))))))))))...----....((......)).......---..)))..))). ( -19.90, z-score = -2.01, R) >droSim1.chr3L 3628968 90 - 22553184 ACAGUACUUCACGCGACUUGGAGUGCCAUUUAUACUUAACAUAUUUGGCACUUGACAAA----AACAGCACACACGCCAC-AAA---AAGUCGAGAAU .......(((...((((((.((((((((..(((.......)))..))))))))......----....((......))...-...---)))))).))). ( -21.60, z-score = -3.43, R) >consensus ACAGUACUUCAGGCGACUUCGAGUGCCAUUUAUACUUAACAUAUUUGGCACUUGACAAA____AACAGCACACACGCCACAAAA___AAGUCGAGAAU ...........(((....((((((((((..(((.......)))..))))))))))............((......))............)))...... (-15.66 = -16.48 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:02:09 2011