| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,069,319 – 4,069,417 |
| Length | 98 |
| Max. P | 0.758501 |
| Location | 4,069,319 – 4,069,417 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 72.99 |
| Shannon entropy | 0.34670 |
| G+C content | 0.42261 |
| Mean single sequence MFE | -21.97 |
| Consensus MFE | -13.75 |
| Energy contribution | -14.20 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.758501 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4069319 98 - 24543557 AAUCGUUCUCUGCAAAAAUUGCUGAAUAAUUCUAUUAGCUGUUGGUCAGCUGUUUCAGGCAAAAGGAACUGUCAAACAUUUUGACAGUUCAUCAACCC ..........(((..((((.(((((.((((..........)))).))))).))))...)))....((((((((((.....))))))))))........ ( -25.70, z-score = -2.78, R) >droSec1.super_2 4061811 78 - 7591821 ---CGUUUUCGGCAAAACUUGCUGAAUAAUUGUAUCAGCUGUUGGUCAGCUGUUUCAGGCAAACGG-ACAGUUCAACAACCC---------------- ---....(((((((.....)))))))...((((...(((((((.((..(((......)))..)).)-))))))..))))...---------------- ( -22.40, z-score = -2.10, R) >droSim1.chr3L 3608863 77 - 22553184 ---CG-UUUCGGCAAAACUUGCUGAAUAAUUGUAUCAGCUGUUGGUCAGCUGUUUCAGACAAGCAG-ACAGUUCAACAACCC---------------- ---.(-((((((((.....))))))....(((...((((((.....))))))...))).......)-)).............---------------- ( -17.80, z-score = -0.61, R) >consensus ___CGUUUUCGGCAAAACUUGCUGAAUAAUUGUAUCAGCUGUUGGUCAGCUGUUUCAGGCAAACGG_ACAGUUCAACAACCC________________ ........((((((.....))))))....(((...((((((.....))))))...)))........................................ (-13.75 = -14.20 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:02:08 2011