| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,043,020 – 4,043,074 |
| Length | 54 |
| Max. P | 0.818208 |
| Location | 4,043,020 – 4,043,074 |
|---|---|
| Length | 54 |
| Sequences | 5 |
| Columns | 54 |
| Reading direction | forward |
| Mean pairwise identity | 89.63 |
| Shannon entropy | 0.17473 |
| G+C content | 0.61111 |
| Mean single sequence MFE | -15.64 |
| Consensus MFE | -12.34 |
| Energy contribution | -13.14 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.818208 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4043020 54 + 24543557 CAGACGCUGCUUGGGGCCACCAUUGGCACCAUCCGCAGCUCCAUCCAUCUAACC ..((.(((((.(((.((((....)))).)))...)))))))............. ( -18.40, z-score = -2.67, R) >droEre2.scaffold_4784 6747823 54 + 25762168 GAGACGCUGCUUGGGGGCACCACUCACACCAUCCGCAGCUGUAUCCAUCUAACC ((.(((((((.((((((.....)))...)))...))))).)).))......... ( -11.90, z-score = -0.14, R) >droYak2.chr3L 4610736 54 + 24197627 CAGACGCUGCUUAGGGGCACCACUCACACCAUCCGCAGCUCCAUCCAUCUCACC ..((.(((((....((............))....)))))))............. ( -10.50, z-score = -1.22, R) >droSec1.super_2 4035739 54 + 7591821 CAGACGCUGCUUGGGGCCACCACUGGCACCACCAGCAGCUCCAUCCAUCUAACC ..((.(((((((((.((((....)))).)))..))))))))............. ( -19.40, z-score = -2.93, R) >droSim1.chr3L 3582775 54 + 22553184 CAGACGCUGCUUAGGGCCACCACUGGCACCACCAGCAGCUCCAUCCAUCUAACC ..((.((((((..((((((....)))).))...))))))))............. ( -18.00, z-score = -3.37, R) >consensus CAGACGCUGCUUGGGGCCACCACUGGCACCAUCCGCAGCUCCAUCCAUCUAACC .....(((((...((((((....)))).))....)))))............... (-12.34 = -13.14 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:02:07 2011