| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,018,751 – 4,018,843 |
| Length | 92 |
| Max. P | 0.559928 |
| Location | 4,018,751 – 4,018,843 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 78.66 |
| Shannon entropy | 0.41677 |
| G+C content | 0.45949 |
| Mean single sequence MFE | -23.50 |
| Consensus MFE | -13.98 |
| Energy contribution | -15.37 |
| Covariance contribution | 1.39 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.559928 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4018751 92 + 24543557 AUCUUUUGGUGAGGGUGUUUGCAUAUCCCUAUAUUUAUAGACCAAUGCGCUGCUCUCCCCCAAAAACACACACCCAUAAGAUUGGGAUGAGG ...((((((.((((((...(((((....((((....))))....)))))..))))))..)))))).....((((((......)))).))... ( -24.10, z-score = -1.19, R) >droSim1.chr3L 3557899 92 + 22553184 AUCUUGUGGUGAGGGUGUUCGCAUAUCCCUAUAUUUAUAGACCAAUGCGCUGCUCUCCCCAAAAAACACACACCCAUAAGAUUGGGAUGAGG ..((..(((.((((((...(((((....((((....))))....)))))..)))))).))............((((......)))))..)). ( -25.50, z-score = -1.46, R) >droSec1.super_2 4011642 91 + 7591821 AUCUUUUGGUGAGGGUGUUCGCAUAUCCCUAUAUUUAUAGACCAAUGCGCUGCUCUCCCCAAAAA-CACAGACCCAUAUGAUUGGGAUGAGG ...((((((.((((((...(((((....((((....))))....)))))..)))))).)))))).-..((..((((......)))).))... ( -27.30, z-score = -2.10, R) >droYak2.chr3L 4585769 91 + 24197627 AUCUUGUGGUGAGGGUGUCUGCAUAUCCCUAUAUUUAUAGACCAAUGCGCUGCUCUCCCCAAAAA-CACACACCCAUUCUUCUGGGAUGAGG ..((..(((.(((((((..(((((....((((....))))....))))).))))))).)).....-......((((......)))))..)). ( -23.00, z-score = -0.74, R) >droEre2.scaffold_4784 6723061 73 + 25762168 AUCUUGUGGUGAGGGUGUUUGCAUAUCCCUAUAUUAAUAGACCAAUGCGCUGCUCUCCCCAAGAA-CACACACC------------------ .(((((.((.((((((...(((((....((((....))))....)))))..))))))))))))).-........------------------ ( -21.70, z-score = -2.69, R) >droAna3.scaffold_13337 1872335 88 + 23293914 AUCUUUGUGCAAUUGUGUUUGUUUAUCUCAGUAUUUAUAGACCAAUACGCUGCUCUCCCCAAAACACACAGGCGAGGGCCUCCGGAGG---- ..(((((.((.((((.((((((.(((....)))...))))))))))..)).((((((.((..........)).))))))...))))).---- ( -19.40, z-score = -0.19, R) >consensus AUCUUGUGGUGAGGGUGUUUGCAUAUCCCUAUAUUUAUAGACCAAUGCGCUGCUCUCCCCAAAAA_CACACACCCAUAAGAUUGGGAUGAGG ......(((.((((((...(((((....((((....))))....)))))..)))))).)))...........((((......))))...... (-13.98 = -15.37 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:02:05 2011