| Sequence ID | dm3.chr3L |
|---|---|
| Location | 4,017,090 – 4,017,172 |
| Length | 82 |
| Max. P | 0.724939 |
| Location | 4,017,090 – 4,017,172 |
|---|---|
| Length | 82 |
| Sequences | 6 |
| Columns | 82 |
| Reading direction | forward |
| Mean pairwise identity | 93.74 |
| Shannon entropy | 0.11987 |
| G+C content | 0.40679 |
| Mean single sequence MFE | -13.07 |
| Consensus MFE | -9.85 |
| Energy contribution | -10.22 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.724939 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 4017090 82 + 24543557 GCAUAAAUCAAGCGAUGACAACGUGAACAACAACACCGGUAGUCACGCACUAAACUAUAACUAUAACUACGCGAUUACACAC ((.........(((.((((.(((((........)))..)).))))))).......(((....))).....)).......... ( -11.10, z-score = -1.09, R) >droAna3.scaffold_13337 1870648 79 + 23293914 GCAUAAAUCAAGCGAUGACAACGGGAACAACAACACCGGUAGUCACGCACUAAACUAUAACUAUAUAAAUGCAAUUACA--- ((((.......(((.((((.((.((..........)).)).))))))).......((((....)))).)))).......--- ( -16.20, z-score = -3.97, R) >droEre2.scaffold_4784 6721425 82 + 25762168 GCAUAAAUCAAGCGAUGACAACGGGAACAACAACAGCGGUAGUCACGCACUAAACUAUAACUAUAACUAGGCAAUUACACAC ((.........(((.((((.((.(............).)).)))))))............(((....))))).......... ( -12.10, z-score = -1.97, R) >droYak2.chr3L 4584102 82 + 24197627 GCAUAAAUCAAGUGAUGACAACGGGAACAACAACACCGGUAGUCACGCACUAAACUAUAACUAUAACUAUGCAAUUACACAC (((((.....((((.((((.((.((..........)).)).))))..))))....(((....)))..))))).......... ( -14.70, z-score = -2.79, R) >droSec1.super_2 4009980 82 + 7591821 GCAUAAAUCAAGCGAUGACAACGUGAACAACAACACCGGUAGUCACGCACUAAACUAUAACUAUAACUACACGAUUACACCC ...........(((.((((.(((((........)))..)).))))))).................................. ( -10.90, z-score = -1.56, R) >droSim1.chr3L 3556231 82 + 22553184 GCAUAAAUCAAGCGAUGACAACGGGAACAACAACACCGGUAGUCACGCACUAAACUAUAACUAUAACUACGCGAUUACACAC ((.........(((.((((.((.((..........)).)).))))))).......(((....))).....)).......... ( -13.40, z-score = -2.53, R) >consensus GCAUAAAUCAAGCGAUGACAACGGGAACAACAACACCGGUAGUCACGCACUAAACUAUAACUAUAACUACGCAAUUACACAC ...........(((.((((.((.((..........)).)).))))))).................................. ( -9.85 = -10.22 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:02:04 2011