| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,998,915 – 3,999,102 |
| Length | 187 |
| Max. P | 0.874162 |
| Location | 3,998,915 – 3,999,032 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 85.03 |
| Shannon entropy | 0.28275 |
| G+C content | 0.33914 |
| Mean single sequence MFE | -24.97 |
| Consensus MFE | -14.35 |
| Energy contribution | -15.30 |
| Covariance contribution | 0.95 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.554085 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3998915 117 - 24543557 GAAAUUUCAAGGUUUAUGCUGUAAAUACUGC--AGCUGAUGUUUACUAAGCAUCGUUAAAUAUAAAACC-AAAAGUUUGCACUCCCCUGACGGAGAUUUAUGACUGUUUCAGCAUAUUCA (((((.(((.(((((..((((((.....)))--))).((((((.....))))))..........)))))-...........((((......)))).....)))..))))).......... ( -27.30, z-score = -2.17, R) >droSim1.chr3L 3542542 117 - 22553184 GAAAUAUCAAGGUUUAUGCUGUAAAUACUGC--AGCUGAUGUUUACUAAGCAUCGUUAAAUAUAAAACC-AAAAGUUUUCACUCCCCUGACGGAGAUUUAUGACUGUUUCAGCAUAUUCA (((((((((.(((((..((((((.....)))--))).((((((.....))))))..........)))))-...........((((......)))).....))).)))))).......... ( -28.40, z-score = -2.95, R) >droSec1.super_2 3991516 117 - 7591821 GAAAUAUCAAGGUUUAUGCUGUAAAUACUGC--AGCUGAUGUUUACUAAGCAUCGUUAAAUAUAAAACC-AAAAGUUUUCACUCCCCUGACGGAGAUUUAUGACUGUUUCAGCAUAUUCA (((((((((.(((((..((((((.....)))--))).((((((.....))))))..........)))))-...........((((......)))).....))).)))))).......... ( -28.40, z-score = -2.95, R) >droYak2.chr3L 4563396 118 - 24197627 GAAAUAUCAAAGUUUAUGCUGUAAAUACAGC--AGCUGAUGUUUAUUAAGCAUCGUUAAAUAUAAACCCAAAAAGUUUUCACUCCCCCGACGGAGAUUUAUGGCUCUUUCAGCAUAUUCA ...........(..(((((((.(((...(((--(((.((((((.....)))))))))........................((((......)))).......))).))))))))))..). ( -23.40, z-score = -1.93, R) >droEre2.scaffold_4784 6701032 117 - 25762168 GAAAUAUCAAAGUUUAUGCUGUAAAUACUGC--AGCUGAUGUUUAUUAAGCAUCGUUAAAUAUAAAACC-AAAAGUUUUCACUCCCCCGACGGAGAUUUAUGGCUGUUUCAGCAUAUUCA ...........(..(((((((........((--((((((((((.....))))))..(((((..(((((.-....)))))..((((......))))))))).))))))..)))))))..). ( -27.80, z-score = -2.92, R) >droAna3.scaffold_13337 1846114 106 - 23293914 ---GAAUCCA---UUGUGGUAUAAAUAAAGCCUAUUCUUUAUUUAUUAUUCAUAGUUAAAUAUAAAAAC-AAAAGUGGU-ACUCCCCCCGAAGAGAUUUAUGG------CAGCAUUUCCA ---......(---((((((.((((((((((......))))))))))...))))))).............-....((.((-((((........)))...))).)------).......... ( -14.50, z-score = 0.11, R) >consensus GAAAUAUCAAGGUUUAUGCUGUAAAUACUGC__AGCUGAUGUUUACUAAGCAUCGUUAAAUAUAAAACC_AAAAGUUUUCACUCCCCCGACGGAGAUUUAUGACUGUUUCAGCAUAUUCA ...........(..(((((((...............(((((((.....)))))))..........................((((......))))..............)))))))..). (-14.35 = -15.30 + 0.95)
| Location | 3,998,994 – 3,999,102 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 71.14 |
| Shannon entropy | 0.54210 |
| G+C content | 0.33902 |
| Mean single sequence MFE | -20.31 |
| Consensus MFE | -12.78 |
| Energy contribution | -13.32 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.06 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.874162 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3998994 108 - 24543557 ----UAAAACGUUUUAAUGAAAACUA---UCAAAUGCAUGAAACAACCGC-UUGUUCUAACUGCUUCGCUUUAUAGCUGAAAUUUCAAGGUUUAUGCUGUAAAUACUGCAGCUGAU-- ----......(((((....))))).(---(((..((((..........((-..((.......))...))((((((((..(((((....)))))..))))))))...))))..))))-- ( -17.20, z-score = 0.07, R) >droSim1.chr3L 3542621 108 - 22553184 ----UACAACGUUUUAAUGAAAACUA---UGAACUGGAUGGAACAACCGC-UUGUUCUAACUGCUUCGCUUUAUAGCUGAAAUAUCAAGGUUUAUGCUGUAAAUACUGCAGCUGAU-- ----......(((((....))))).(---((((((((.((((((((....-)))))))).))..((((((....))).))).......)))))))((((((.....))))))....-- ( -24.10, z-score = -2.26, R) >droSec1.super_2 3991595 108 - 7591821 ----UACAACGUUUUAAUGAAAACUA---UCAACUGGAUGGAACAACCGC-UUGUUCUAACUGCUUCGCUUUAUAGCUGAAAUAUCAAGGUUUAUGCUGUAAAUACUGCAGCUGAU-- ----......(((((....))))).(---(((......((((((((....-)))))))).((((.....((((((((..((((......))))..))))))))....)))).))))-- ( -22.40, z-score = -1.60, R) >droYak2.chr3L 4563476 109 - 24197627 ----UAACACGUUUUAAAGAAAACUA---UCAAAUGGAUGGAAGAACCGCUUUGUUCCAACUGCAUCGCUUUAUAGUGGAAAUAUCAAAGUUUAUGCUGUAAAUACAGCAGCUGAU-- ----......(((((....))))).(---(((..((((..((((.....))))..))))...((.(((((....)))))...............((((((....))))))))))))-- ( -21.50, z-score = -0.78, R) >droEre2.scaffold_4784 6701111 94 - 25762168 -------------------UAAACUA---UUAAAUAAAUGGAACAACCGCUUUGUUCUAACUGCUUCGCUUUAUAGUUGAAAUAUCAAAGUUUAUGCUGUAAAUACUGCAGCUGAU-- -------------------((((((.---.........((((((((.....)))))))).....((((((....)).)))).......)))))).((((((.....))))))....-- ( -18.50, z-score = -1.99, R) >droAna3.scaffold_13337 1846186 112 - 23293914 UAAAUAAUAAAUGGAAAGUGUCUCUAGUUUAAAUCACACUGAGUUUGAGUUUGGCUUUAAAUGGGUUGUCUCUCGGUUGAA---UCCA---UUGUGGUAUAAAUAAAGCCUAUUCUUU ........((((....(((((..............)))))..))))((((..((((((((((((((..((........)))---))))---))..........))))))).))))... ( -18.14, z-score = 0.18, R) >consensus ____UAAAACGUUUUAAUGAAAACUA___UCAAAUGGAUGGAACAACCGC_UUGUUCUAACUGCUUCGCUUUAUAGCUGAAAUAUCAAGGUUUAUGCUGUAAAUACUGCAGCUGAU__ ......................................((((((((.....)))))))).((((.....((((((((..((((......))))..))))))))....))))....... (-12.78 = -13.32 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:02:00 2011