| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,280,865 – 4,280,918 |
| Length | 53 |
| Max. P | 0.608858 |
| Location | 4,280,865 – 4,280,918 |
|---|---|
| Length | 53 |
| Sequences | 5 |
| Columns | 57 |
| Reading direction | reverse |
| Mean pairwise identity | 89.84 |
| Shannon entropy | 0.17613 |
| G+C content | 0.53127 |
| Mean single sequence MFE | -16.34 |
| Consensus MFE | -15.74 |
| Energy contribution | -16.42 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.12 |
| Mean z-score | -0.86 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.608858 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4280865 53 - 23011544 CAAGGACAUAGAAAUAUUGUCUCUGAAUCCGGGUCCCCAGUG---GCUGGGCUCAC- ((..((((((....)).))))..)).....(((..(((((..---.))))))))..- ( -14.70, z-score = -0.51, R) >droSim1.chr2L 4201314 54 - 22036055 CAAGGACAUAGAAAUAUUGUCUCUGAAACCGGGUCCCCAGUG---GCUGGGCUUCCA ((..((((((....)).))))..)).....(((..(((((..---.)))))..))). ( -17.90, z-score = -1.38, R) >droSec1.super_5 2378755 54 - 5866729 CAAGGACAUAGAAAUAUUGUCUCUGAAACCGGGUCCCCAGUG---GCUGGGCUUCCA ((..((((((....)).))))..)).....(((..(((((..---.)))))..))). ( -17.90, z-score = -1.38, R) >droYak2.chr2L 4310996 57 - 22324452 CAAGGACACAGAAAUAUUGUCUCUUAAUCCGGAUCCCCAGUGGCUGCUGGGCUGCCC .(((((((.........)))).))).....((...((((((....))))))...)). ( -15.40, z-score = -0.35, R) >droEre2.scaffold_4929 4357583 53 - 26641161 CAAGGACACAGAAAUAUUGUCUCUGAAUCCGGGUCUCCAGUG---GCUGGGCUCCC- ...(((..((((.........))))..)))(((..(((((..---.)))))..)))- ( -15.80, z-score = -0.68, R) >consensus CAAGGACAUAGAAAUAUUGUCUCUGAAUCCGGGUCCCCAGUG___GCUGGGCUCCC_ ((..((((((....)).))))..)).....(((..((((((....))))))..))). (-15.74 = -16.42 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:15:58 2011