| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,998,237 – 3,998,329 |
| Length | 92 |
| Max. P | 0.983187 |
| Location | 3,998,237 – 3,998,329 |
|---|---|
| Length | 92 |
| Sequences | 7 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 80.69 |
| Shannon entropy | 0.33562 |
| G+C content | 0.57045 |
| Mean single sequence MFE | -33.81 |
| Consensus MFE | -21.53 |
| Energy contribution | -23.81 |
| Covariance contribution | 2.29 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.70 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.13 |
| SVM RNA-class probability | 0.983187 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3998237 92 + 24543557 GGCGGUGAUGGGCCAAGUUGAUGGGCUAUGGCUAUAUGGC--------GAUGGAGAUGGCGAUGGCGGCAAUCGAUUGAUUGUGGCCAAACACGCAGUGC .(((((....((((..........(((((.(((((....(--------....)..))))).))))).((((((....))))))))))..)).)))..... ( -32.30, z-score = -1.85, R) >droPer1.super_32 154295 70 - 992631 -------------AGCGGUGAUGGGCCAUGGAUG---GGC--------------UAUGGCGAUGGCGGCAAUCGAUUGAUUGUGGCCAAACACGCAGCAC -------------.((.(((.((.(((((((...---..)--------------))))))..((((.((((((....)))))).))))..))))).)).. ( -31.80, z-score = -3.93, R) >dp4.chrXR_group8 646439 70 + 9212921 -------------AGCGGUGAUGGGCCAUGGAUG---GGC--------------UAUGGCGAUGGCGGCAAUCGAUUGAUUGUGGCCAAACACGCAGCAC -------------.((.(((.((.(((((((...---..)--------------))))))..((((.((((((....)))))).))))..))))).)).. ( -31.80, z-score = -3.93, R) >droEre2.scaffold_4784 6700367 92 + 25762168 GGCGGUGAUGGGCCAAGUUGAUGGGCUAUGGCUAUAUGGC--------GAUGGAGAUGGCGAUGGCGGCAAUCGAUUGAUUGUGGCCAAACACGCAGUGC .(((((....((((..........(((((.(((((....(--------....)..))))).))))).((((((....))))))))))..)).)))..... ( -32.30, z-score = -1.85, R) >droYak2.chr3L 4562688 100 + 24197627 GGCGGUGAUGGGCCAAGUUGAUGGGCUAUGGCUAUAUGGCUAUAUGGCGAUGGAGAUGGCGAUGGCGGCAAUCGAUUGAUUGUGGCCAAACACGCAGUGC .(((((.....((((..((.((.(.((((((((....))))))).).).)).))..))))..((((.((((((....)))))).)))).)).)))..... ( -38.50, z-score = -3.02, R) >droSec1.super_2 3990839 92 + 7591821 GGCAGUGAUGGGCCAAGUUGAUGGGCUAUGGCUAUAUGGC--------GCUGGAGAUGGCGAUGGCGGCAAUCGAUUGAUUGUGGCCAAACACGCAGUGC ...(((.((((.(((......))).)))).))).....((--------((((..(.((....((((.((((((....)))))).))))..))).)))))) ( -35.00, z-score = -2.16, R) >droSim1.chr3L 3541864 92 + 22553184 GGCGGUGAUGGGCCAAGUUGAUGGGCUAUGGCUAUAUGGC--------GCUGGAGAUGGCGAUGGCGGCAAUCGAUUGAUUGUGGCCAAACACGCAGUGC ...(((.((((.(((......))).)))).))).....((--------((((..(.((....((((.((((((....)))))).))))..))).)))))) ( -35.00, z-score = -2.17, R) >consensus GGCGGUGAUGGGCCAAGUUGAUGGGCUAUGGCUAUAUGGC________GAUGGAGAUGGCGAUGGCGGCAAUCGAUUGAUUGUGGCCAAACACGCAGUGC ...(((.((((.(((......))).)))).))).........................(((.((((.((((((....)))))).))))....)))..... (-21.53 = -23.81 + 2.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:01:58 2011