| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,975,799 – 3,975,890 |
| Length | 91 |
| Max. P | 0.866675 |
| Location | 3,975,799 – 3,975,890 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 86.84 |
| Shannon entropy | 0.20164 |
| G+C content | 0.47665 |
| Mean single sequence MFE | -29.85 |
| Consensus MFE | -25.01 |
| Energy contribution | -25.45 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.866675 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3975799 91 + 24543557 -------------CAUCCAUUGCUACUGCUACGGCUACAGCUCCAGCUGAAGCUAAAGGCAAAGCCAAAGCUUUAUAGCGAAGGCAUCAAGUGCAAGUAUCCAU -------------......((((.((((((..((((.((((....)))).))))...)))...(((...(((....)))...)))....)))))))........ ( -27.60, z-score = -1.67, R) >droEre2.scaffold_4784 6677398 104 + 25762168 CAUCCACUGCUACUUGCUGUAGCUGCAGCUCCUGCUCCAGCUCCAGCUGAAGCUAAAGGCAAAGCCAAAGCUUUAUAGCGAAGGCAUCAAGUGCAAGUAUCCAU .....(((((.((((((((.(((((.(((....))).))))).))))(((((((...(((...)))..)))))))..((....))...)))))).)))...... ( -36.50, z-score = -2.04, R) >droSec1.super_2 3968565 91 + 7591821 -------------CAUCCAUUGCUACUGCUACAGCUACAGCUCCAGCUGAAGCUAAAGGCAAAGCCAAAGCUUUAUAGCGAAGGCAUCAAGUGCAAGUAUCCAU -------------......((((.((((((..((((.((((....)))).))))...)))...(((...(((....)))...)))....)))))))........ ( -27.60, z-score = -2.00, R) >droSim1.chr3L 3519351 91 + 22553184 -------------CAUCCAUUGCUACUGCUACAGCUACAGCUCCGGCUGAAGCUAAAGGCAAAGCCAAAGCUUUAUAGCGAAGGCAUCAAGUGCAAGUAUCCAU -------------......((((.((((((..((((.((((....)))).))))...)))...(((...(((....)))...)))....)))))))........ ( -27.70, z-score = -1.71, R) >consensus _____________CAUCCAUUGCUACUGCUACAGCUACAGCUCCAGCUGAAGCUAAAGGCAAAGCCAAAGCUUUAUAGCGAAGGCAUCAAGUGCAAGUAUCCAU ...................((((.((((((..((((.((((....)))).))))...)))...(((...(((....)))...)))....)))))))........ (-25.01 = -25.45 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:01:54 2011