| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,975,501 – 3,975,611 |
| Length | 110 |
| Max. P | 0.654756 |
| Location | 3,975,501 – 3,975,611 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 92.46 |
| Shannon entropy | 0.12841 |
| G+C content | 0.60015 |
| Mean single sequence MFE | -26.52 |
| Consensus MFE | -22.53 |
| Energy contribution | -22.93 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.654756 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3975501 110 + 24543557 ACCGCUGUCCUUGGUUCUCCGCCCUCCUGUUGCGUGUCACGCUGUCGUCGCUGGCAUCUACAUCCAACAU-------CCUGAAUCGCCUCCAC---CCCCAAGGACCAAUCCUAGCAUCC ...(((((((((((......((..((.(((((.((((...(.(((((....))))).).)))).))))).-------...))...))......---..)))))))).......))).... ( -23.25, z-score = -1.11, R) >droEre2.scaffold_4784 6677115 110 + 25762168 ACCGCUGUCCUUGGAACUCCGCCCUCCUGUUGCGUGUCACGCUGUCGUCGCUGGCAUCUACAUCCAACAU-------CCUGCAUCGCCUCCGC---CUCCAAGGACCAAUCCUUGCAUCC ......(((((((((.....((.....(((((.((((...(.(((((....))))).).)))).))))).-------...))...((....))---.))))))))).............. ( -26.50, z-score = -1.62, R) >droYak2.chr3L 4538626 120 + 24197627 ACCGCUGUCCUUGGAUCUCCGCCCUCCUGUUGCGUGUCACGCUGUCGUCGCUGGCAUCUACAUCCAACAUUCAACAUCCUGCAUCGCCAGCGCUCUCCCCAAGGACCCACUCUAGCAUCC ...(((((((((((.................(((.....)))....(.(((((((..............................)))))))).....)))))))).......))).... ( -30.42, z-score = -2.17, R) >droSec1.super_2 3968268 110 + 7591821 ACCGCUGUCCUUGGUUCUCCGCCCUCCUGUUGCGUGUCACGCUGUCGUCGCUGGCAUCUACAUCCAACAU-------CCUGCAUCGCCUCCGC---CCCCAAGGACCAAUCCUAGCAUCC ...(((((((((((......((.....(((((.((((...(.(((((....))))).).)))).))))).-------...))...((....))---..)))))))).......))).... ( -26.21, z-score = -1.77, R) >droSim1.chr3L 3519054 110 + 22553184 ACCGCUGUCCUUGGUUCUCCGCCCUCCUGUUGCGUGUCACGCUGUCGUCGCUGGCAUCUACAUCCAACAU-------CCUGCAUCGCCUCCGC---CCCCAAGGACCAAUCCUAGCAUCC ...(((((((((((......((.....(((((.((((...(.(((((....))))).).)))).))))).-------...))...((....))---..)))))))).......))).... ( -26.21, z-score = -1.77, R) >consensus ACCGCUGUCCUUGGUUCUCCGCCCUCCUGUUGCGUGUCACGCUGUCGUCGCUGGCAUCUACAUCCAACAU_______CCUGCAUCGCCUCCGC___CCCCAAGGACCAAUCCUAGCAUCC ...(((((((((((.............(((((.((((...(.(((((....))))).).)))).)))))................((....)).....)))))))).......))).... (-22.53 = -22.93 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:01:53 2011