| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,960,901 – 3,960,999 |
| Length | 98 |
| Max. P | 0.946434 |
| Location | 3,960,901 – 3,960,999 |
|---|---|
| Length | 98 |
| Sequences | 7 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 83.80 |
| Shannon entropy | 0.30036 |
| G+C content | 0.46634 |
| Mean single sequence MFE | -24.19 |
| Consensus MFE | -21.76 |
| Energy contribution | -22.07 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.52 |
| SVM RNA-class probability | 0.946434 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3960901 98 - 24543557 --------------CCCCACUUUGAACACUCCACUGUGAGCGCUCGUGUUUGACAUUGUCGCCGUUAGCUAAUCUUUUUAGCGUAUGUUGGCAUUUUCCAUGUUUGCGCUUG --------------............(((......)))(((((.((((...(((...)))((((...(((((.....)))))......))))......))))...))))).. ( -24.80, z-score = -2.01, R) >droSim1.chr3L 3504166 98 - 22553184 --------------CCCCACUUUGAACACAUCACUGUGAGCGCUCGUGUUUGACAUUGUCGCCGUUAGCUAAUCUUUUUAGCGUAUGUUGGCAUUUUCCAUGUUUGCGCUUG --------------...(((..(((.....)))..)))(((((.((((...(((...)))((((...(((((.....)))))......))))......))))...))))).. ( -26.30, z-score = -2.22, R) >droSec1.super_2 3953866 98 - 7591821 --------------CCCCACUUUGAACACUCCACUGUGAGCGCUCGUGUUUGACAUUGUCGCCGUUAGCUAAUCUUUUUAGCGUAUGUUGGCAUUUUCCAUGUUUGCGCUUG --------------............(((......)))(((((.((((...(((...)))((((...(((((.....)))))......))))......))))...))))).. ( -24.80, z-score = -2.01, R) >droYak2.chr3L 4523274 112 - 24197627 UUCCCCGCUUUUCCCACUGUUUGAAACACUCCACUGUGGGCGCUCGUGUUUGACAUUGUCGCCGUUAGCUAAUCUUUUUAGCGUAUGUUGGCAUUUUCCAUGUUUGCGCUUG .............((((.((..((.....)).)).))))((((.((((...(((...)))((((...(((((.....)))))......))))......))))...))))... ( -26.70, z-score = -1.36, R) >droEre2.scaffold_4784 6662533 89 - 25762168 -----------------------GAGCACUCCACUGUGGGCGCUCGUGUUUGACAUUGUCGCCGUUAGCUAAUCUUUUUAGCGUAUGUUGGCAUUUUCCAUGUUUGCGCUUG -----------------------((((.(((......))).))))((((..((((((((((.(((..(((((.....)))))..))).)))))......))))).))))... ( -25.90, z-score = -1.44, R) >droAna3.scaffold_13337 1804129 92 - 23293914 --------------------CCCUGACACUCCAGAGUGAGCGCUCGUGUUUGACAUUGUCGCCGUUAGCUAAUCUUUUUAGCGUAUGUUGGCAUUUUCCAUGUUUGCGUUGG --------------------.((...((((....))))(((((.((((...(((...)))((((...(((((.....)))))......))))......))))...))))))) ( -24.30, z-score = -1.28, R) >droWil1.scaffold_180698 8721540 88 - 11422946 ---------------------UCCCACAAUUCA--GUGCUCCCUCGUGUUUGACAUUGUCGCCGUUAGCUAAUCUUUUUAGCGUAUGUUGGCAUUUUUCAUGUUUGCGUUG- ---------------------..........((--((((.....((((...(((...)))((((...(((((.....)))))......))))......))))...))))))- ( -16.50, z-score = -1.05, R) >consensus ______________C_C___UUUGAACACUCCACUGUGAGCGCUCGUGUUUGACAUUGUCGCCGUUAGCUAAUCUUUUUAGCGUAUGUUGGCAUUUUCCAUGUUUGCGCUUG ..........................(((......)))(((((.((((...(((...)))((((...(((((.....)))))......))))......))))...))))).. (-21.76 = -22.07 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:01:50 2011