| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,927,693 – 3,927,793 |
| Length | 100 |
| Max. P | 0.979659 |
| Location | 3,927,693 – 3,927,793 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 66.93 |
| Shannon entropy | 0.59614 |
| G+C content | 0.46099 |
| Mean single sequence MFE | -24.38 |
| Consensus MFE | -15.39 |
| Energy contribution | -16.12 |
| Covariance contribution | 0.73 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.03 |
| SVM RNA-class probability | 0.979659 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3927693 100 + 24543557 UAUCUGCGACCUUCCUUUUUUAUGACCCGUCAAGAAAUCGAAGGCCAGUCAUCUGUUCUUUAUAGUCAGCUUCCCCACACCCAAG--UGAAAGUGGAUGCAU------ ((((..((.(((((..(((((.(((....))))))))..))))).)(((...((((.....))))...)))....(((......)--))...)..))))...------ ( -20.20, z-score = -0.96, R) >droSim1.chr3L 3468507 100 + 22553184 UAUCUGCGGCCUUCCUUUUUUAUGACCCGUCAGAAAAUCGAAGGCCAGUCAUCUGUUCUUUAUAGACAGCUUCCCCACAGCCAAG--UGAAAGCGGAUGCAU------ ((((((((((((((..(((((.(((....))))))))..)))))))(((..(((((.....)))))..)))....(((......)--))...)))))))...------ ( -32.10, z-score = -3.85, R) >droSec1.super_2 3921114 100 + 7591821 UAUCUGCGGCCUUCCUUUUUUAUGGCCCGUCAGAAAAUCGAAGGCCAGUCAUCUGUUCUUUAUAGACAGCUUCCCCACAGCCAAG--UGAAAGCGGAUGCAU------ ((((((((((((((..(((((.(((....))))))))..)))))))(((..(((((.....)))))..)))....(((......)--))...)))))))...------ ( -31.20, z-score = -2.85, R) >droYak2.chr3L 4488597 85 + 24197627 UAUCUGCGGCCAUUCUUUUUUAUGGGCCGUCAAGAAAUCGAAGGCCAG-----------------AGAGCUUCCCCACACACAACACUGAAAGUGGAUGCAU------ ..(((..((((.(((..((((.(((....))).))))..)))))))..-----------------)))((....((((...((....))...))))..))..------ ( -19.30, z-score = -0.06, R) >droEre2.scaffold_4784 6627246 106 + 25762168 UAUCUGCGACCUUCCUUUUUUAUGGGCUGUCAAGAAAUCGAAGGCCAGUCAUCGGUUCCUUACAGAGAGCUUCCCCCCACACAAC--UGAAAGUGGAUGUGGAUGCAU ..((((.(((..(((........)))..)))(((.((((((.((....)).)))))).))).))))..((.((((.((((.....--.....))))..).))).)).. ( -26.60, z-score = -0.01, R) >droWil1.scaffold_180698 8670573 82 + 11422946 CAUUGACUGCGGUGCUAAAUUCAUAUUCAUUC--AAGUUCAUGGUCAGCCAU-------------GCAGAUUGACGAUCUCAAAC--GAAAAGUCAGUA--------- .(((((((.(((((.......)))......((--((...(((((....))))-------------)....))))..........)--)...))))))).--------- ( -16.90, z-score = -0.41, R) >consensus UAUCUGCGGCCUUCCUUUUUUAUGACCCGUCAAGAAAUCGAAGGCCAGUCAUCUGUUCUUUAUAGACAGCUUCCCCACACCCAAC__UGAAAGUGGAUGCAU______ ((((((((((((((..(((((.(((....))))))))..)))))))(((..(((((.....)))))..))).....................)))))))......... (-15.39 = -16.12 + 0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:01:48 2011