| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,276,141 – 4,276,236 |
| Length | 95 |
| Max. P | 0.992104 |
| Location | 4,276,141 – 4,276,236 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 68.02 |
| Shannon entropy | 0.62913 |
| G+C content | 0.52785 |
| Mean single sequence MFE | -28.75 |
| Consensus MFE | -15.32 |
| Energy contribution | -17.35 |
| Covariance contribution | 2.03 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.52 |
| SVM RNA-class probability | 0.992104 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4276141 95 - 23011544 AGCGCGGACUUGGAAGGCUGGCGAUGACAAUUGGCAGCUCCAACGGAGUGCAGACUGCGCUCCGAUAAAAUAACAAGCUGAAGUGGGUAGUGGGG--- ..(((....(((((..((((.((((....)))).)))))))))((((((((.....))))))))........((..((....))..)).)))...--- ( -33.70, z-score = -2.02, R) >droEre2.scaffold_4929 4352765 98 - 26641161 AGCGCGCACUUCCAAGGCUGGCGAUGACAAUUGGCAGCUCCAACGGAGUGCAGACUGCGCUCCGAUAAAAUAACACACUGGAGAGGGGAGUGGGGAGU ....(.(((((((..(((((.((((....)))).)))))....((((((((.....)))))))).....................))))))).).... ( -39.40, z-score = -3.12, R) >droYak2.chr2L 4306158 98 - 22324452 AGCGCGGACUUGCAAGGCUGGCGAUGACAAUUGGCAGCUCCAACGGAGUGCAGACUGCCCUCCGAUAAAAUAACCAACUGAAAUGGGGAAUGGGAAGU .......((((.(...((((.((((....)))).))))(((..(((((.((.....)).))))).........(((.......))))))...).)))) ( -29.40, z-score = -0.83, R) >droSec1.super_5 2374140 74 - 5866729 ---------------------CGAUGACAAUCGGCAGCUCCAACGGAGUGCAGACUGCGCUCCGAUAAAAUAACAAGCUGAAGUGGGAAGUGGGG--- ---------------------((((....))))....(((((.((((((((.....)))))))).........(..((....))..)...)))))--- ( -23.60, z-score = -2.09, R) >droSim1.chr2L 4196619 94 - 22036055 AGCGCGGACUUGGAAGGCUGGCGAUGACAAUUGGCAGCUCCAACGGAGUGCAGACUGCGCUCCGAU-AAAUAACAAGCUGAAGUGGGAAGUGGGG--- ....(((.((((...(((((.((((....)))).)))))....((((((((.....))))))))..-......)))))))...............--- ( -33.30, z-score = -2.06, R) >droVir3.scaffold_13246 349557 72 - 2672878 AGCGUACA-AUGUAAGGACAUCGAGCGAAUCUAUCAGGGCAAAAGAGCCGCAUAUUCUAACCUGAUAAAAUAA------------------------- ..(((.(.-((((....)))).).)))....(((((((.....((((.......))))..)))))))......------------------------- ( -13.10, z-score = -0.71, R) >consensus AGCGCGGACUUGCAAGGCUGGCGAUGACAAUUGGCAGCUCCAACGGAGUGCAGACUGCGCUCCGAUAAAAUAACAAGCUGAAGUGGGAAGUGGGG___ ...............(((((.((((....)))).)))))....((((((((.....)))))))).................................. (-15.32 = -17.35 + 2.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:15:57 2011