| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,917,728 – 3,917,819 |
| Length | 91 |
| Max. P | 0.527284 |
| Location | 3,917,728 – 3,917,819 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 72.25 |
| Shannon entropy | 0.41465 |
| G+C content | 0.44428 |
| Mean single sequence MFE | -18.91 |
| Consensus MFE | -13.73 |
| Energy contribution | -12.97 |
| Covariance contribution | -0.75 |
| Combinations/Pair | 1.40 |
| Mean z-score | -0.89 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.527284 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3917728 91 - 24543557 CAGUUUUAUUUUUUGCCAUUUUCCUUGUUGCUCGGCUCCAU---UUUCUCACCUAUUUAAUUGGAGCUCAAUUGCCGCUUAGUGGCACAACAUG------------------ .........................(((((...(((((((.---.................)))))))....((((((...)))))))))))..------------------ ( -20.37, z-score = -2.40, R) >droEre2.scaffold_4784 6617183 112 - 25762168 CGUUUUGAUGUUUUGCCAUUUUCCUCGCUCCUCGUCUCCAUCUAUUUUCCACCUGUUUUAUUGGGGGUCAAUUGCCGCUUAGUGCCACAACACGAGCAAUUCACGUUGGUUG ....(..((((.(((((.........((.......................((((......))))(((.....)))))...(((......)))).))))...))))..)... ( -16.30, z-score = 1.73, R) >droSec1.super_2 3911256 79 - 7591821 ------------CAGUUUUUUUCCUCGCUGCUCGGCUUCAU---UUUUCCACCUAAUUUAUUGGGGCUCAAAUGCCGCUUAGUGGCACAACAUG------------------ ------------..............((..((.(((..(((---((.....(((((....)))))....)))))..))).))..))........------------------ ( -19.00, z-score = -1.81, R) >droSim1.chr3L 3458285 91 - 22553184 CAGUUUUAUUUUUUGCCAUUUUCCUCGCUGCUCGGCUCCAU---UUUUCCACCUAGUUUAUUGGGGCUCAAUUGCCGCUUAGUGGCACAACAUG------------------ .............(((((((......((.((..(((((((.---.................))))))).....)).))..))))))).......------------------ ( -19.97, z-score = -1.08, R) >consensus CAGUUUUAUUUUUUGCCAUUUUCCUCGCUGCUCGGCUCCAU___UUUUCCACCUAUUUUAUUGGGGCUCAAUUGCCGCUUAGUGGCACAACAUG__________________ ..............((((((......((.....(((((((.....................))))))).....)).....)))))).......................... (-13.73 = -12.97 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:01:48 2011