| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,883,319 – 3,883,419 |
| Length | 100 |
| Max. P | 0.953031 |
| Location | 3,883,319 – 3,883,419 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 80.26 |
| Shannon entropy | 0.32292 |
| G+C content | 0.45890 |
| Mean single sequence MFE | -25.60 |
| Consensus MFE | -18.04 |
| Energy contribution | -18.35 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.52 |
| SVM RNA-class probability | 0.946403 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3883319 100 + 24543557 -CCGAUCAUUUUCCAUAUC---------------AUUUUCACAACCGUUUUCACGCAGAUUCACGCCCCCAAAAAAGUCCACUCUAUUAGAGUGGACCGCCGUUAGGUUGCCA-UGA -................((---------------((.....(((((........((........))..........((((((((.....))))))))........)))))..)-))) ( -21.00, z-score = -2.57, R) >droEre2.scaffold_4784 6582434 115 + 25762168 CCGAAACCUCUUCCACAUGUACGAGUAUAUUCUCAUUUUCACAACCGUUUUCACGCCGAUUCACGCCCACAAAUG-GGCCACUCUAUUAGAGUGGACCGCCGCUAGGUUGCCG-UGA .............(((......(((......))).......(((((((....))((.(..((..(((((....))-)))(((((.....)))))))...).))..)))))..)-)). ( -27.40, z-score = -1.10, R) >droYak2.chr3L 4441712 111 + 24197627 -CCGAUCAUCUUCCAUAUA----UGUAUAUUCCCAUAUUCACAAUCGUUUUCACGCUGAUUCACGCCCACAAAGA-GUCCACUCUAUUAGAGUGGACCACCGUUAGGCUGAAGGUGA -....((((((((...(((----((........)))))..........................(((........-((((((((.....))))))))........))).)))))))) ( -27.59, z-score = -2.42, R) >droSec1.super_2 3876558 114 + 7591821 -CCGAUCAUUUUCCAUAUCCAUAUGUAUAUUAUCAUUUUCACAACCGUUUUCACGCUGAUUCACGCCCACAAAAG-GUCCACUCUAUUAGAGUGGACCGCCGUUAGGUUGCCA-UGA -..(((.((....((((....))))...)).))).......(((((........((........))........(-((((((((.....))))))))).......)))))...-... ( -26.40, z-score = -2.70, R) >consensus _CCGAUCAUCUUCCAUAUC____UGUAUAUUCUCAUUUUCACAACCGUUUUCACGCUGAUUCACGCCCACAAAAA_GUCCACUCUAUUAGAGUGGACCGCCGUUAGGUUGCCA_UGA .........................................(((((........((........))..........((((((((.....))))))))........)))))....... (-18.04 = -18.35 + 0.31)
| Location | 3,883,319 – 3,883,419 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 80.26 |
| Shannon entropy | 0.32292 |
| G+C content | 0.45890 |
| Mean single sequence MFE | -35.01 |
| Consensus MFE | -20.79 |
| Energy contribution | -21.35 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.62 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.59 |
| SVM RNA-class probability | 0.953031 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3883319 100 - 24543557 UCA-UGGCAACCUAACGGCGGUCCACUCUAAUAGAGUGGACUUUUUUGGGGGCGUGAAUCUGCGUGAAAACGGUUGUGAAAAU---------------GAUAUGGAAAAUGAUCGG- (((-((.(..(((((..(.(((((((((.....))))))))))..)))))).))))).(((.(((....)))((..(....).---------------.))..)))..........- ( -31.20, z-score = -2.83, R) >droEre2.scaffold_4784 6582434 115 - 25762168 UCA-CGGCAACCUAGCGGCGGUCCACUCUAAUAGAGUGGCC-CAUUUGUGGGCGUGAAUCGGCGUGAAAACGGUUGUGAAAAUGAGAAUAUACUCGUACAUGUGGAAGAGGUUUCGG (((-((((((((..(((.((((.(((((.....)))))(((-((....)))))....)))).)))......))))))....(((((......)))))...)))))............ ( -37.60, z-score = -1.62, R) >droYak2.chr3L 4441712 111 - 24197627 UCACCUUCAGCCUAACGGUGGUCCACUCUAAUAGAGUGGAC-UCUUUGUGGGCGUGAAUCAGCGUGAAAACGAUUGUGAAUAUGGGAAUAUACA----UAUAUGGAAGAUGAUCGG- (((.((((.(((((.(((.(((((((((.....))))))))-)..)))))))).....(((.(((....)))....)))(((((........))----)))...)))).)))....- ( -36.70, z-score = -3.11, R) >droSec1.super_2 3876558 114 - 7591821 UCA-UGGCAACCUAACGGCGGUCCACUCUAAUAGAGUGGAC-CUUUUGUGGGCGUGAAUCAGCGUGAAAACGGUUGUGAAAAUGAUAAUAUACAUAUGGAUAUGGAAAAUGAUCGG- (((-..((..((((.....(((((((((.....))))))))-).....))))..........(((....)))))..)))...((((......((((....)))).......)))).- ( -34.52, z-score = -2.89, R) >consensus UCA_CGGCAACCUAACGGCGGUCCACUCUAAUAGAGUGGAC_CUUUUGUGGGCGUGAAUCAGCGUGAAAACGGUUGUGAAAAUGAGAAUAUACA____GAUAUGGAAAAUGAUCGG_ ......((((((........((((((((.....))))))))..........((((......))))......))))))........................................ (-20.79 = -21.35 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:01:41 2011