| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,868,143 – 3,868,300 |
| Length | 157 |
| Max. P | 0.731622 |
| Location | 3,868,143 – 3,868,300 |
|---|---|
| Length | 157 |
| Sequences | 4 |
| Columns | 167 |
| Reading direction | reverse |
| Mean pairwise identity | 75.35 |
| Shannon entropy | 0.39853 |
| G+C content | 0.29620 |
| Mean single sequence MFE | -35.52 |
| Consensus MFE | -19.16 |
| Energy contribution | -20.48 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.731622 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3868143 157 - 24543557 GCACUGGGAGAAAAAUAGCGAUGGAAUUUCUAAAAGCAAAUAUAAAAGAAGUGUGUAG----------UUUUAGAAUUUAUAUAAGUCAAAUAAGUAUGAAACUCAAAUUCGUUACUAAUCAAAUAUCAUCUAUUAAGUGUUUCAAGUUUGAAUUCUUUUCAGUGCA ((((((..((((...(((..(((((((((((...............)))))).((.((----------(((((..((((((.........)))))).)))))))))..)))))..))).((((((..(((.......)))......)))))).))).)..)))))). ( -30.96, z-score = -1.87, R) >droEre2.scaffold_4784 6566109 160 - 25762168 GCACUGGCAGAAAAACAGGUGAGGAAUUUGUGCCAAAGUAUAUAUCGAAAGUGUGUGUGCU-------CUUAACGAUGUUUAGAAUUCAUAUAAGUUAGAAACUCAGCUGCGUUACCCAAGGCAUAUGGCUUACUUUGUGUUUUAUAUUUCAAUUUCUUGCAGUGUA ((((((.((((((..(((.((((.((((((((.....(((((((((....).))))))))(-------((.(((...))).))).....)))))))).....)))).)))........((((((((.((....)).)))))))).........)))).)))))))). ( -38.80, z-score = -0.45, R) >droSec1.super_2 3861758 166 - 7591821 GCACUGGGAGAAAAAUAGCGGAGGAAUUUCUGAAAGCAUAUAUAAAAGAGGUGUGUAAAUUUCACAACAUUUAGAAUUUAUAUAAGUCGAAUAAGUAUGAAACUCAAAUUCGUUAUAAAUCGAAUAUCACCUAUUAAUUGUUUUAAGUUUG-AUUUUUUUCAGUGCA ((((((..(((((...(((..(((......(((...(((((.((...((..(((((((((((...........)))))))))))..))...)).)))))....))).(((((........)))))....))).((((.....)))))))..-.)))))..)))))). ( -36.80, z-score = -2.65, R) >droSim1.chr3L 3408507 166 - 22553184 GCACUGAGAGAAAAAUAGCGGUGGAAUUUCUGAAAACAUAUAUAAAAUAAGUGUGUAAAUUUAACAACUUUUAGAAUUUAUAUAAGUCAAAUGAGUAUAAAACUGAAAUUCGUUACUAAUCGAAUAUCACCUAUUAAGUGUUUUAAGUUUG-AUUUUUUUCAGUGCA (((((((((((((.....(((........)))...((((((.........))))))((((((((..((((.(((..(((((((...((....)))))))))..(((.(((((........))))).))).)))..))))...)))))))).-.))))))))))))). ( -35.50, z-score = -2.52, R) >consensus GCACUGGGAGAAAAAUAGCGGAGGAAUUUCUGAAAACAUAUAUAAAAGAAGUGUGUAAAUU_______UUUUAGAAUUUAUAUAAGUCAAAUAAGUAUGAAACUCAAAUUCGUUACUAAUCGAAUAUCACCUAUUAAGUGUUUUAAGUUUG_AUUUUUUUCAGUGCA (((((((((((((..............((((((((((((((.........))))))............)))))))).....................(((((((((.(((((........))))).)))..........))))))........))))))))))))). (-19.16 = -20.48 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:01:38 2011