| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,272,224 – 4,272,317 |
| Length | 93 |
| Max. P | 0.982863 |
| Location | 4,272,224 – 4,272,317 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 96.08 |
| Shannon entropy | 0.06986 |
| G+C content | 0.40480 |
| Mean single sequence MFE | -28.52 |
| Consensus MFE | -25.96 |
| Energy contribution | -26.08 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.71 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.12 |
| SVM RNA-class probability | 0.982863 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4272224 93 - 23011544 GGCCGGGCAUUAGAGCAGAAUUAUGCAUUUGAUUUGUGUAAUUUUGUGGUAAAUAUAUAGUUCUGCAACUAUGCCGAGCGCGGUCAAUUUACG (((((.((.(((..(((((((((((((.......)))))))))))))..)))...(((((((....)))))))....)).)))))........ ( -30.60, z-score = -3.09, R) >droEre2.scaffold_4929 4348806 91 - 26641161 AGCUGGGCAUUAGAGCAGAAUUAUGCAUUUGAUUUGUGUAAUUUUGUGGUAA--AUAUAGUUGUGCAACUAUGCCGAGUGAGGUCAAUUUACG .(((.(((.(((..(((((((((((((.......)))))))))))))..)))--..((((((....))))))))).))).............. ( -26.90, z-score = -2.75, R) >droYak2.chr2L 4302105 91 - 22324452 GGUCGGGCAUUAGAGCAGAAUUAUGCAUUUGAUUUGUGUAAUUUUGUGGUAA--AUAUAGUUCUGCAACUAUGCCGAGCGCGGUCAAUUUACG (..((.((......(((((((((((((.......)))))))))))))(((..--..((((((....)))))))))..)).))..)........ ( -27.70, z-score = -2.58, R) >droSec1.super_5 2370300 91 - 5866729 GCCCGGGCAUUAGAGCAGAAUUAUGCAUUUGAUUUGUGUAAUUUUGUGGUAA--AUAUAGUUCUGCAACUAUGCCGAGCGCGGUCAAUUUACG (.(((.((......(((((((((((((.......)))))))))))))(((..--..((((((....)))))))))..)).))).)........ ( -26.50, z-score = -1.84, R) >droSim1.chr2L 4192709 91 - 22036055 GGCCGGGCAUUAGAGCAGAAUUAUGCAUUUGAUUUGUGUAAUUUUGUGGUAA--AUAUAGUUCUGCAACUAUGCCGAGCGCGGUCAAUUUACG (((((.((......(((((((((((((.......)))))))))))))(((..--..((((((....)))))))))..)).)))))........ ( -30.90, z-score = -3.28, R) >consensus GGCCGGGCAUUAGAGCAGAAUUAUGCAUUUGAUUUGUGUAAUUUUGUGGUAA__AUAUAGUUCUGCAACUAUGCCGAGCGCGGUCAAUUUACG (((((.((......(((((((((((((.......)))))))))))))(((......((((((....)))))))))..)).)))))........ (-25.96 = -26.08 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:15:56 2011