| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,821,085 – 3,821,191 |
| Length | 106 |
| Max. P | 0.500000 |
| Location | 3,821,085 – 3,821,191 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 77.08 |
| Shannon entropy | 0.43232 |
| G+C content | 0.46378 |
| Mean single sequence MFE | -29.09 |
| Consensus MFE | -14.89 |
| Energy contribution | -16.70 |
| Covariance contribution | 1.81 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3L 3821085 106 - 24543557 UUUGUCUGCGG-AAUCUACAGAGGACAGCGGUGGGGCA---GGUGUGUGGAACUGAUGGGGCUCUUUGAGCCAAAUCAAAAUCAAAAACAAAACUGGCGUAACCGAUGUG ..(.((((..(-...)..)))).)(((.(((((.(.((---(.(((.(((...((((..(((((...)))))..))))...)))...)))...))).).).)))).))). ( -32.10, z-score = -1.68, R) >droEre2.scaffold_4784 6519079 106 - 25762168 UUUGUCUGCGG-CAUCUACAGAGGACAUCGGUGGGGCA---GGUGUGCGGAAAUAAUGGGGCUCUAUGAGCCACAUCAAAAUCAAAAACGAAACUGGCGCAACCGAUGUG ..(.((((..(-...)..)))).)(((((((((.(.((---(.(((...((....(((.(((((...))))).))).....))....)))...))).).).)))))))). ( -33.60, z-score = -1.87, R) >droYak2.chr3L 4378227 110 - 24197627 UUUGUCUGCGGAUGUCUACAGGGGACAUCGGUGGGGCAGGUGGUGUGCGGAAAUAAUGGGGCUCUUUGAGCCAAAUCAAAAUCAAAAACAAAACUGGCGCAACCGAUGUG ..(.((((..(....)..)))).)((((((((.(.((.(((..(((...((........(((((...))))).........))....)))..))).)).).)))))))). ( -35.53, z-score = -2.21, R) >droSec1.super_2 3815081 106 - 7591821 UUUGUCUGCGG-AAUCUACAGAGGACAGCGGUGGGGCA---GGUGUGUGGAACUGAUGGGGCUCUUUGAGCCAAAUCAAAAUCAAAAACAAAAUUGGCGUAACCGGUGUG ..(.((((..(-...)..)))).)(((.(((((.(.((---(.(((.(((...((((..(((((...)))))..))))...)))...)))...))).).).)))).))). ( -32.00, z-score = -1.60, R) >droSim1.chr3L 3361314 106 - 22553184 UUUGUCUGCGG-AAUCUACCGAGGACAGCGGUGGGGCA---GGUGUGUGGAACUGAUGGGGCUCUUUGAGCCAAAUCAAAAUCAAAAACAAAACUGGCGUAACCGAUGUG .((((((.(((-......))).))))))(((((.(.((---(.(((.(((...((((..(((((...)))))..))))...)))...)))...))).).).))))..... ( -36.10, z-score = -2.54, R) >triCas2.chrUn_52 174866 89 - 242491 ------------------CCGAGAAUUGUUAAGAGAUA---AUCCUAUAAAACCGAUGAGACUCUUUAAUCAUAAUCAAUACACAAUACAAAACUUAAAUAACCGAUGAA ------------------..((..((.((((((((...---(((..........)))....))).))))).))..))................................. ( -5.20, z-score = 0.50, R) >consensus UUUGUCUGCGG_AAUCUACAGAGGACAGCGGUGGGGCA___GGUGUGUGGAACUGAUGGGGCUCUUUGAGCCAAAUCAAAAUCAAAAACAAAACUGGCGUAACCGAUGUG ........................(((.((((.(.((......(((...((..((((..(((((...)))))..))))...))....)))......)).).)))).))). (-14.89 = -16.70 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:01:36 2011