| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,815,433 – 3,815,550 |
| Length | 117 |
| Max. P | 0.813635 |
| Location | 3,815,433 – 3,815,550 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 67.86 |
| Shannon entropy | 0.54519 |
| G+C content | 0.40824 |
| Mean single sequence MFE | -26.54 |
| Consensus MFE | -15.38 |
| Energy contribution | -17.14 |
| Covariance contribution | 1.76 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.813635 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3815433 117 - 24543557 ---CAUGUCCAGUAUUUCUGAAAAUCAAGGCCGGAAGGUGUCCCCGGGGUAAACCCAGAUGCAGGAAAACUAGAUAAGGAAAAUAACUUUUUUAUAUUAUAAGGCAUUUUAUAUCCUUGA ---...(((.(((.((((((...(((...(((....)))......(((.....))).))).)))))).))).)))(((((((((..(((...........)))..))))....))))).. ( -29.10, z-score = -1.12, R) >droSim1.chr3L 3355692 117 - 22553184 ---CAUUUCCAGUUUUUCUGAAAAUCAAGGCCGGAAGGUGUCCAAGGGGUAAACCCAGAUGCAGGAAAACUAGAUAAGGAAAACAUCUAUAUUAUCCUAUAGAGCAUCUUAUGUCUUAGA ---.......((((((((((...(((...(((....)))......(((.....))).))).))))))))))(((((((((.....((((((......))))))...)))).))))).... ( -33.80, z-score = -2.72, R) >droSec1.super_2 3809429 103 - 7591821 ---CAUUUCCAGUUUUUCUAAAAAUCAAGGCCGGAAGGUGUCCAAGGGGUAAACCCAGAUGCAGGAAAACUAGAUAAGGAAAACAUCUAAAUAAUCCUAUAGAGCA-------------- ---..((((((((((((((....(((...(((....)))......(((.....))).)))..)))))))))......)))))...((((..........))))...-------------- ( -24.10, z-score = -1.51, R) >droYak2.chr3L 4372116 102 - 24197627 ACUCGUAUCCAGGAUUUCUUAGAUUCCGCGCCGGAAGGUGUCCCAGGGAUAAGCCCAAAUGCAGGAAAACUAGAUGAAGGAAAAAGUGGAAGCAUUUUCACU------------------ .((..((((.((..((((((..((((((((((....)))))....)))))..((......)))))))).)).))))..))....(((((((....)))))))------------------ ( -26.90, z-score = -0.66, R) >droEre2.scaffold_4784 6513180 102 - 25762168 AUACAUAUCCAGCAUUUCAGAAAAUCAUGGCCGGAAAGUGUCCCAGGGACAAGCCCAAAUGCAAGGUAGCUAGAUAAAGGAAAAACUGCAAGCAAUUUCCCU------------------ .....((((.(((....((........))((((((.....)))..(((.....)))........))).))).))))..(((((...((....)).)))))..------------------ ( -18.80, z-score = 0.56, R) >consensus ___CAUAUCCAGUAUUUCUGAAAAUCAAGGCCGGAAGGUGUCCCAGGGGUAAACCCAGAUGCAGGAAAACUAGAUAAGGAAAAAAUCUAAAUCAUCUUAUAG_GCA______________ .....((((.(((.((((((...(((...(((....)))......(((.....))).))).)))))).))).))))............................................ (-15.38 = -17.14 + 1.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:01:33 2011