| Sequence ID | dm3.chr3L |
|---|---|
| Location | 3,806,739 – 3,806,823 |
| Length | 84 |
| Max. P | 0.624988 |
| Location | 3,806,739 – 3,806,823 |
|---|---|
| Length | 84 |
| Sequences | 6 |
| Columns | 86 |
| Reading direction | forward |
| Mean pairwise identity | 70.87 |
| Shannon entropy | 0.55817 |
| G+C content | 0.36142 |
| Mean single sequence MFE | -15.00 |
| Consensus MFE | -5.55 |
| Energy contribution | -7.05 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.624988 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 3806739 84 + 24543557 --GCCGGCUAAAUGGUUUGUUUUUGUUGAAACUAGGAGAAAAUUAAUAAAAACAAAAGAUAUACCCGAAGAAACAUGCCGAGCCAA --((((((...((..((((((((((((((.............))))))))))))))..))......(......)..)))).))... ( -16.62, z-score = -2.02, R) >droYak2.chr3L 4363823 84 + 24197627 --GCCGGCUAAAUGGUUUGUUUUUGUUGAAAGUAGAAGAAAUUUAUUAAAAACAUAAGAAAUACCUUAAGAAACAUGCCGAGCCAC --...((((...((((.((((((((((...((((((.....))))))...))).((((......))))))))))).)))))))).. ( -19.40, z-score = -3.29, R) >droEre2.scaffold_4784 6504722 84 + 25762168 --GCCGGCUAAAUGGUUUGUUUUUGUUGAAACUUGAAGAAACAUUUUAAAAAUAAAAGAAAUACCUGAGAAAAGAUGUCGAGCCAC --...((((....(((...((((((((......((......)).......))))))))....)))(((.(.....).))))))).. ( -12.02, z-score = -0.32, R) >droSec1.super_2 3801142 84 + 7591821 --GCCGGCUAAAUGGUUUGUUUUUGUUGAAACUAGGAGAAAACUAAUUAAAACAUAAGAAAUACCCGAAGAAACAUGCCGAGCCAC --...((((...((((.((((((((((..((.(((.......))).))..)))...(....)......))))))).)))))))).. ( -16.20, z-score = -1.82, R) >droSim1.chr3L 3347296 84 + 22553184 --GCCGGCUAAAUGGUUUGUUUUUGUUGAAACUAGGAGAAAACUAAUUAAAACAUAAGAAAUACCAGAAGAAACAUGCCGAGCCAC --((((((....((((...((((((((..((.(((.......))).))..)))).))))...))))..........)))).))... ( -16.54, z-score = -2.00, R) >droAna3.scaffold_13337 13658266 76 - 23293914 AAUAUAAUUAAAUAGUCCUAGUUUCUCUGAAGAAGAGACUACCCGGCAAGAAGAAACAAAAACCAUGACCCCCGAC---------- ..............(((.(((((((((....).))))))))...))).............................---------- ( -9.20, z-score = -1.13, R) >consensus __GCCGGCUAAAUGGUUUGUUUUUGUUGAAACUAGAAGAAAACUAAUAAAAACAAAAGAAAUACCUGAAGAAACAUGCCGAGCCAC .....((((...((((.(((((((............................................))))))).)))))))).. ( -5.55 = -7.05 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:01:32 2011